BAC Information

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BAC

Clone NameMSMg01-265O10
Chromosome1 (Build37)
Map Location 34,299,161 - 34,465,701
singlet/doubletdoublet
Overlap geneDst, LOC100040913, LOC383629
Upstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O10.T7 (MSMg01no265_o10.b1)MSMg01-265O10.TJ (MSMg01no265_o10.g1)
ACCAG407031AG407032
length729769
length of high quality
(start - end)
316 (36 - 351)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no265_o10.b1 PHD_FILE: MSMg01no265_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:32 2005CHROMAT_FILE: MSMg01no265_o10.g1 PHD_FILE: MSMg01no265_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,299,161 - 34,299,471)(34,465,420 - 34,465,701)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGA
CCTAGCGAGCATCATCTCACCATTTGCTCATCAGTGGTTCTTTTGCATGT
TTTTATCATCGTTAAATTGTGACGATAGGAAATTTCATTATGCTCATCTT
GGGTTTGTAGGCAATCTTCCTAAATGTATGTAGAATATGTAATTAAATGC
CACAAGTTTATATTTCCTACCAACAGTTCACTTCAGGGACAGTTGCTGGC
TTCAACTACTTAATAAATAAGCACATAGTCTTTACCACTGGTAGTCGTTA
GATGCTAATAATTCTCACAACATGGTTCTCCCAACCTGCAGGTATTCCAT
ATTTTTTTTATCGCCCCCCCGCACGTGAAGCAGCAAGATGTGAACTGGTT
AGGCCCCACCCTTATTCAAAGCGCAGCTGCAAACACCTCCACTCAGGGTC
TGGAGCGTGACCTGTACAGTGTCAACTCAAGGTGGAAGACTCTCAATAAG
AAGGTAGTTGCTTGACTCCTTAGCAATTTTCCCTGTCAGTGTTCATGGAT
AATATTCATGGTCATAGCCACGTGCCCAAACACGCTTCTTCTTCTCATGT
TGTACCCTAAGTGGCCCTTGGCAATCGGCATGGGACACAAATGAATGACG
TTCGTGAGTGGAGACGGAATTTCTTCCACCACCATCCCAACCTTGACAGA
GAGATGAAGCTGCAGACCCTGCCAGTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGTCAGCAGCAATAGCTTTCA
TCTTTTTCCTTATTTATATTTTTAATATTCTCTTCCTTTGCTTGAGCTAG
GCAAGTGCTCTATTGTGAGCTACATCCCCAGCTCTGTTTATATTTTTTGA
TATGAGGATCAGACTTAAATATAAGCCAGGTAAAGGGCACAAGCAGGAAG
TAAGAGGGAGGCCCCTGGTTTTAATTATTTGCTTGTTATACGATACTTGC
TGCCGGCTCATATGACTGGAGTGTCAATTCAGCTTTGTTGACTGTACATT
TTCTCTAGGTTTAATAATTATCCCGAAACCTACTGCATCCTTCACACCTA
GCCTGCCTGTGTCCCCCGCCTATCTACAAGAAATACAGCTCATGTCCCTC
ATCAGAGACGAATCACCAAGTCATGCAATTATTTGCTTCACTTTATTTTA
TTTTTGAGATAGCCTCCGATTGGCTGGTCTCAAATTCTTGATCCTGTTCT
TTGTGACTGCCATGTGCCCAACTTTTGTTTTTAATATAATCCATATTATC
TGAAATAATCCTAAAGTTAGGTACTCACTATATGTTCATCGAGAAGATAT
GCTTGCTCATTATCGTGACCTGGTGAAAGACTCCCTGGTATCCTTCTGAA
GTGATGTAAACTAACCAGCTCCTTAGGTTTGTTGGGCTGTAGGAAGGAGG
AAACGCCATATTCAGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o10.b1 MSMg01no265_o10.b1 CHROMAT_FILE:
MSMg01no265_o10.b1 PHD_FILE: MSMg01no265_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:32 2005
         (316 letters)



>mm_chr1_34298958_34299673
          Length = 716

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgacctagcgagcatcatctcaccatttgctcatcagtggttcttttgcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgacctagcgagcatcatctcaccatttgctcatcagtggttcttttgcat 263

                                                                       
Query: 64  gtttttatcatcgttaaattgtgacgataggaaatttcattatgctcatcttgggtttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttttatcatcgttaaattgtgacgataggaaatttcattatgctcatcttgggtttgt 323

                                                                       
Query: 124 aggcaatcttcctaaatgtatgtagaatatgtaattaaatgccacaagtttatatttcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggcaatcttcctaaatgtatgtagaatatgtaattaaatgccacaagtttatatttcct 383

                                                                       
Query: 184 accaacagttcacttcagggacagttgctggcttcaactacttaataaataagcacatag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accaacagttcacttcagggacagttgctggcttcaactacttaataaataagcacatag 443

                                                                       
Query: 244 tctttaccactggtagtcgttagatgctaataattctcacaacatggttctcccaacctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctttaccactggtagtcgttagatgctaataattctcacaacatggttctcccaacctg 503

                      
Query: 304 caggtattcca 314
           |||||||||||
Sbjct: 504 caggtattcca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no265_o10.g1 MSMg01no265_o10.g1 CHROMAT_FILE:
MSMg01no265_o10.g1 PHD_FILE: MSMg01no265_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:33 2005
         (282 letters)



>mm_chr1_34465112_34465793
          Length = 682

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagtcagcagcaatagctttcatctttttccttatttatatttttaatattctcttcc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 590 ttaagtcagcagcaatagctttcatcttttttcttatttatatttttaatattctcttcc 531

                                                                       
Query: 61  tttgcttgagctaggcaagtgctctattgtgagctacatccccagctctgtttatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tttgcttgagctaggcaagtgctctattgtgagctacatccccagctctgtttatatttt 471

                                                                       
Query: 121 ttgatatgaggatcagacttaaatataagccaggtaaagggcacaagcaggaagtaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttgatatgaggatcagacttaaatataagccaggtaaagggcacaagcaggaagtaagag 411

                                                                       
Query: 181 ggaggcccctggttttaattatttgcttgttatacgatacttgctgccggctcatatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaggcccctggttttaattatttgcttgttatacgatacttgctgccggctcatatgac 351

                                                     
Query: 241 tggagtgtcaattcagctttgttgactgtacattttctctag 282
           ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 350 tggaggggcaattcagctttgttgactatacattttctctag 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)