BAC Information

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BAC

Clone NameMSMg01-266A21
Chromosome1 (Build37)
Map Location 93,330,734 - 93,482,757
singlet/doubletdoublet
Overlap genePer2, Traf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266A21.T7 (MSMg01no266_a21.b1)MSMg01-266A21.TJ (MSMg01no266_a21.g1)
ACCAG407147AG407148
length759753
length of high quality
(start - end)
282 (385 - 666)227 (436 - 662)
definitionCHROMAT_FILE: MSMg01no266_a21.b1 PHD_FILE: MSMg01no266_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:44 2005CHROMAT_FILE: MSMg01no266_a21.g1 PHD_FILE: MSMg01no266_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,330,734 - 93,331,014)(93,482,531 - 93,482,757)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGACTCGGCGGA
ATTCCAGGACAGATAACAAAAAACAGAGAGACCCGGTTTCAACCACTCCC
CATGCCCCCAAAAGAAAAAAAAAAGCCCAAAGACAAAAAGCAACCCTTGT
GGTGGTTTGAATATGCTTGACCTATGGGAATGGCACTATTAGGAGGTGTG
GCCTTGTTGGAATGGGTTTGGCCCTGTTGGAGGAAGTGTGTCACTATGTA
GGCAGGCTTTGAGGGCTCTAAATGCTCAAGCTCTGCCCAGTATGGAAGAG
AACCTCCTCCTGGCTGCCTTCCAATCATGNGTAGAACTCTCAACTCCTTT
TCCAGCACCATGTCTGTTTTTATGCTGCCCTCCTTCCCACCATGATGATA
AGGGACTGAACCTCTGAACCCGCAGGCCAGTCCCAATGAAATGTTGTCCT
TTATAAGAGTTGCCTTGGTCATGGTCTCTCTTCACAGCAATGAAACCCTA
AGACGATGTTCAACCAGTTAATTACTGCAAGCTGAGGTCTTTTGCAGTCT
ATTGAGGTTTTAAAAACAAAACCAATCCAACTATAGTCACTCTGAATCCT
GTAGTCAAGAGGGGACATCCACTCAGTAGTGGGACTGGCTGTGGATAAAC
TGATTTTACTGGAGGTTGATGTCACCAAGTTCCCAGTGTTGGTGACAGTG
TTTTGCGAAAGAGTAGGACTTACACCAGTGTATATCCTATCAGGAATGAA
TGACAGGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAAAAAAGAGCTCATCCTGCATTTGGGGAGACAG
TGACAGGGTTGATGAAGCAGCCGAGGCCTCAGCAGACATGGGCCTCAGGC
CTGGGGACATTACATGCCTGTGGTTTGTGAGCCAGCCAACTTACGGCGCT
TTGTTTCAGCAGAGGTGGACTATGCTAGGCTTCTGCCCCGGAAGGGAGCA
TTCTTGGTTCTGCAGATTAGTATAGGACATCTTTGAAGCCAGCACTGAAC
CATTCAGAGTCTGGTACCATAATCNCTTTAAAGAAGACAGAGACCTGCAA
AGAAGCAGTCCTTTTTTTTGCCCCCCCCCCCCCAGGATTGCAGGTAGTTC
TGGAAGCTGTAATACCCGAGGAAAGCGTGAACCCCTCAGAGGTCCAGAAG
AATCCACAGTGGATGACTGACCCCAGAACTGTAAGAGAATAAATGTGCAT
CGTTTCAAAGTCACTAGACTTGGGGTCATTTGCAACACAACTCTGGAGAC
ATAGCCTTTATAAGGAGGGAACTAAATGAAGAGGAACCAAGGGGAGGCTA
GGTGGGACCCATGGGATGTAGGGGACCAAAGCCACCTAAGCTCTTACGCT
ACACACTCGTCTCTTTGTGTGGATTCCCCAGGGAGTAATGAGGCATCGTG
GCATCTAGAAGCAGCTCTTCTGCGCTCTCCTAGCTAGGGCTTTGGTTCTG
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_a21.b1 MSMg01no266_a21.b1 CHROMAT_FILE:
MSMg01no266_a21.b1 PHD_FILE: MSMg01no266_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:44 2005
         (282 letters)



>mm_chr1_93330534_93331215
          Length = 682

 Score =  482 bits (249), Expect = e-140
 Identities = 273/281 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaccatgatgataagggactgaacctctgaacccgcaggccagtcccaatgaaatgt 60
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 201 tcccaccatgatgataagggactgaacctctgaacctgtaggccagtcccaatgaaatgt 260

                                                                       
Query: 61  tgtcctttataagagttgccttggtcatggtctctcttcacagcaatgaaaccctaagac 120
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgtcctttataagagctgccttggtcatggtctctcttcacaacaatgaaaccctaagac 320

                                                                       
Query: 121 gatgttcaaccagttaattactgcaagctgaggtcttttgcagtctattgaggttttaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgttcaaccatttaattactgcaagctgaggtcttttgcagtctattgaggttttaaa 380

                                                                       
Query: 181 aacaaaaccaatccaactatagtcactctgaatcctgtagtcaagaggggacatccactc 240
           |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 381 aacaaaaccaattcaactatagtcactctgaatcctatagccaagaggggacatccactc 440

                                                    
Query: 241 agtagtgggactggctgtggataaactgattttactggagg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagtgggactggctgtggataaactgattttactggagg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no266_a21.g1 MSMg01no266_a21.g1 CHROMAT_FILE:
MSMg01no266_a21.g1 PHD_FILE: MSMg01no266_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:44 2005
         (227 letters)



>mm_chr1_93482229_93482855
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaggtccagaagaatccacagtggatgactgaccccagaactgtaagagaataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcagaggtccagaagaatccacagtggatgactgaccccagaactgtaagagaataaatg 470

                                                                       
Query: 61  tgcatcgtttcaaagtcactagacttggggtcatttgcaacacaactctggagacatagc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cgcatcgtttcaaagtcactagacttggggtcatttgcaacacaactctggagacatagc 410

                                                                       
Query: 121 ctttataaggagggaactaaatgaagaggaaccaaggggaggctaggtgggacccatggg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctttataaggcgggaactaaatgaagaggaaccaaggggaggctaggtgggacccatggg 350

                                                          
Query: 181 atgtaggggaccaaagccacctaagctcttacgctacacactcgtct 227
           || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 349 atctaggggaccaaagccacctaagctctcacgctacacactcgtct 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)