BAC Information

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BAC

Clone NameMSMg01-266C03
Chromosome1 (Build37)
Map Location 150,743,624 - 150,743,912
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266C03.T7 (MSMg01no266_c03.b1)MSMg01-266C03.TJ (MSMg01no266_c03.g1)
ACCAG407203AG407204
length785730
length of high quality
(start - end)
164 (72 - 235)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no266_c03.b1 PHD_FILE: MSMg01no266_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:50 2005CHROMAT_FILE: MSMg01no266_c03.g1 PHD_FILE: MSMg01no266_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGGTGCGCGG
AATTCCTGTCTCTATCTGAATCTAATAATGTCTTGTTTACAGCAGACTTT
AATTTATGTAAGAAGTTAGTCAAAGTCTCTCTGGGATGTCGTACCATCTT
TCTGAAGGATAGAAATCTTTTCCCTGCTCTTCCTCCTTAGCACAGGTTCT
TAAAGCTACTAAAGAACACTGTATAACAATAGNAATNNCATCGNAATTGC
ATCAGCTCTCTTCAATCAGCAAATTAAACTTCACCTAACAACTGGCCTTT
CATGATATTAACACCTTTAGACCTATTATTTCTTTCCATAACTGGCAGCC
TTAATTCCTTGGGTTNCCCCCCCCCCTAGTGGGGCCAAATCCAACTGGGC
AAATTTGGGAAAAACCAGCTTTTCCCAGGCAACAAGTTTGGGTTGGGTTT
AAAATCTTTTTTTCCCCCCCCCCCCGGGTGGGGGGGAAGGCAACATCCCT
CTTCAGTTCTATGTTTTTATAAAAAAAAACACACCCCCCCTACTTTTTTG
TCTTCTTTCATTATTTTCCCTATTTATTCTTTTTCATTTTTTTCCTCATA
TTGCTTCTCTTCTCTCCCCTCTTCTTTACTCGTCCTCCTTTTTCTCCTCA
TATTTAACCCCCACCTTTTTTTCTCTCCCCTGTTTTTTCTTGCATTACTC
CTCCTCCCGGTATTTTATATACCCTTGACACTCCCAACAGAACTCACTCA
CTCTCTTCTTCATTCATTCCCTTTTACCTCCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTAGCTCTGTACTCCATTT
TTAATAGGGTTATTTGGTTCTCTGGCGTCTAATTTCTTGAGTTCTTTGTA
TATATTGGATATTAGCCCTCTATCAGGTGTAGGGTTGGTGAAGATCTTTT
CCCAATCTGTCGGTTGCCATTTTGTCCTAAAACCAAATATTTCTGTTATC
TGTACTTCTTTTTCATGTTTTCATTTTCTGCTTTCCATTTTACTGTATTA
ATATATTTTATGATTTTTCTTATTGTATTTGTGTTATAAATATGTGTTTT
TGTTTCTACTACTTAGATTAGATCGCNGACCANATCCCATTTTATTTTCT
GTCATAATTTTCACAATTCCCCCCATATAAAAAAAAAGATAATCTTGCCT
TTGGCAAATCATATTATTTTTAATAATGATGCTTTTTTTGGATTGACATC
TTGTATATCTATAATTTAATATTTTAATTTGAAATCAGAAGTCTGTTACA
TGAAATACCTCAAACCTAATACCAGTTCCTATTATCTACATGAATCATTT
GATGAGGTCTTAATACGAATAATATAAAACAATGATGAAAGAATATCTTA
TCAGGATTATATTTTACCTTTCTGACTCACTTTTCTCACTGTTCTGAAGT
ATTATTGTGGTTGTTCTAGTTGTTTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_c03.g1 MSMg01no266_c03.g1 CHROMAT_FILE:
MSMg01no266_c03.g1 PHD_FILE: MSMg01no266_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:50 2005
         (289 letters)



>mm_chr1_150743245_150743933
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcttagctctgtactccatttttaatagggttatttggttctctggcgtctaatttc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 668 tttgtttagctctgtactccatttttaatagggttatttggttctctggagtctaatttc 609

                                                                       
Query: 61  ttgagttctttgtatatattggatattagccctctatcaggtgtagggttggtgaagatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 608 ttgagttctttgtatatattggatattagccctctatcaggtgtagggttggtgaagacc 549

                                                                       
Query: 121 ttttcccaatctgtcggttgccattttgtcctaaaaccaaatatttctgttatctgtact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttttcccaatctgtcggttgccattttgtcctaaaaccaaatatttctgttatctgtact 489

                                                                       
Query: 181 tctttttcatgttttcattttctgctttccattttactgtattaatatattttatgattt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 488 tctttttcatgttttcattttctgctttccattttactgtattaatatattttacgattt 429

                                                            
Query: 241 ttcttattgtatttgtgttataaatatgtgtttttgtttctactactta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcttattgtatttgtgttataaatatgtgtttttgtttctactactta 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)