BAC Information

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BAC

Clone NameMSMg01-266I04
Chromosome1 (Build37)
Map Location 82,295,684 - 82,496,162
singlet/doubletdoublet
Overlap geneRhbdd1, Col4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266I04.T7 (MSMg01no266_i04.b1)MSMg01-266I04.TJ (MSMg01no266_i04.g1)
ACCAG407480AG407481
length760737
length of high quality
(start - end)
260 (45 - 304)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no266_i04.b1 PHD_FILE: MSMg01no266_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005CHROMAT_FILE: MSMg01no266_i04.g1 PHD_FILE: MSMg01no266_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,495,907 - 82,496,162)(82,295,684 - 82,295,973)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGTATCATTTCCCCAGCTTTAAAAATAGAATTATTTTTAAAAA
GTGTATGTGTATTTATTATGAGTCCCTGCATGTAGTTATGCACATCACAT
ACAAGTATGTATGTGCATCAAGTGCATTCCTGGTGCATGGAGAGGTTAGA
GGAGGAAGTAGGTCCCCTGGAACTGGAGTTACAAGGTCTTCAGCATCACC
ATGCGGATGCTGCTGACCAACAGCGTTCTCTGCAAAGCCAGCAAGTGCTC
TCAGTACTGAGCCATCTCTCTAGCTCTTTTTCTGATATCTTACCCATGGT
GAACTGCTAACGTATGAGTGCCTCCTATACCCCGTTCCCAATTCATATAC
ATATTTTAAATAGAGCTGCCCCCCCCAAAAAATGAGAAAAAATATGCTCT
GGGCGCGCTAGACGCTTCTGCAAGCCAGGAAAGGTATATAACAAATATTT
TCTTAGCCAGAATTCTTCGACTCATTTCTTGCCCCGCTCCATATGTGCTC
CCCATCATTCACCCTATTTTGATCCCTGCTCCCTTCCCATTTTTTCTTCC
GTTCTGTTTTTTTTCCTTCTCTCCCATTTTCCCTCAGCTATCTCCTTTTC
TTTTCGTCCTTCTTCTCCGTTCTCTCCCTTTTCCTTTTTTCCCTACTCTT
CTACCTTATTAATTCTCTCCCCCCCATTTCACCCTTTTCCCCCTTTCCTC
ACCTATTCCG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAATAACAGGCAGGAGGACA
CTGAGTAGTCATAAGTGGCCAGCTGAAAATATGCAATATTTGGAGTTTGC
AATTTATAATTTGGTACAATTCATGCAAAGCTTCACAATTTTAAGAGCAG
TGGGAGACACAATCCCACAATGAAAAAGATATGAGTCATATAGAGTTAGC
ATCCTTGAGACTGACGACAATAAGGCATACATATAAGACAGTTCAGGTAT
CCAGAACTGTCCAGCCTCCCTTTAGTAGTCATCCTCCCCATTCTGCACAC
ATTTAAATTTCCCTTATAATTTACTCGTTTGCAAGTGCCTGGTTGTGTAG
GTCTGAAGGATCTGGATAACCCCGCATAAATACAAAAATAAAAGATAACG
AAGAATGAGTATAACCTGTAGCTTTCTAGAACCATGGGGAAACTGGCTAA
GAAAACCTATGGATTTCTTACGGATTTATATGAAACAGAAATAACTTTCC
ACACTCTCTATGGTGTAGCAACTATACAAACTATATCCTCCCCTTCAGAG
GACAGTTGAAGAAGAGCTATGCAAATTTCCAAAGCATATTTTATTTGTCC
CAGAAATTCTATTGCGAGGAGAGAAAAAATAACTATACAGTGAATATAGA
AAGGGTATATTCCAATGCTACTTGGTAAAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_i04.b1 MSMg01no266_i04.b1 CHROMAT_FILE:
MSMg01no266_i04.b1 PHD_FILE: MSMg01no266_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:19 2005
         (260 letters)



>mm_chr1_82495858_82496517
          Length = 660

 Score =  456 bits (236), Expect = e-133
 Identities = 251/256 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgtatcatttccccagctttaaaaatagaattatttttaaaaagtgtatgt 64
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 305 gaattctcatgtataatttccccagctttaaaaatacaattatttttaaaaagtgtatgt 246

                                                                       
Query: 65  gtatttattatgagtccctgcatgtagttatgcacatcacatacaagtatgtatgtgcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtatttattatgagtccctgcatgtagttatgcacatcacatacaagtatgtatgtgcat 186

                                                                       
Query: 125 caagtgcattcctggtgcatggagaggttagaggaggaagtaggtcccctggaactggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 caagtgcattcctggtgcatggagaggttagaggaggaagtaggtcccctggaactggag 126

                                                                       
Query: 185 ttacaaggtcttcagcatcaccatgcggatgctgctgaccaacagcgttctctgcaaagc 244
           |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 125 ttacaaggtcttcagcgtcaccatgtggatgctgctgaccaacagtgttctctgcaaagc 66

                           
Query: 245 cagcaagtgctctcag 260
           ||||||||||||||||
Sbjct: 65  cagcaagtgctctcag 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no266_i04.g1 MSMg01no266_i04.g1 CHROMAT_FILE:
MSMg01no266_i04.g1 PHD_FILE: MSMg01no266_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:19 2005
         (292 letters)



>mm_chr1_82295484_82296175
          Length = 692

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccaataacaggcaggaggacactgagtagtcataagtggccagctgaaaatatgcaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccaataacaggtaggaggacactgagtagtcataagtggccagctgaaaatatgcaa 260

                                                                       
Query: 61  tatttggagtttgcaatttataatttggtacaattcatgcaaagcttcacaattttaaga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tatttggagtttgcaatttataatttggtacaatttatgcaaagcttcacaattttaaga 320

                                                                       
Query: 121 gcagtgggagacacaatcccacaatgaaaaagatatgagtcatatagagttagcatcctt 180
           |||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 321 gcagtgggagacacaagcccacaatgaaaaatatttgaatcatatagagttagcatcctt 380

                                                                       
Query: 181 gagactgacgacaataaggcatacatataagacagttcaggtatccagaactgtccagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagactgacgacaataaggcatacatataagacagttcaggtatccagaactgtccagcc 440

                                                             
Query: 241 tccctttagtagtcatcctccccattctgcacacatttaaatttccctta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctttagtagtcatcctccccattctgcacacatttaaatttccctta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)