BAC Information

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BAC

Clone NameMSMg01-266K24
Chromosome1 (Build37)
Map Location 115,164,157 - 115,164,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266K24.T7 (MSMg01no266_k24.b1)MSMg01-266K24.TJ (MSMg01no266_k24.g1)
ACCAG407605AG407606
length919782
length of high quality
(start - end)
38 (111 - 148)235 (57 - 291)
definitionCHROMAT_FILE: MSMg01no266_k24.b1 PHD_FILE: MSMg01no266_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:32 2005CHROMAT_FILE: MSMg01no266_k24.g1 PHD_FILE: MSMg01no266_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTATCCTCTCTTACTCCTTTCTCCCCCCCCTCCCCTTCCNNTNT
TTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG
TGCAATTCCTAATCTTTGTGCTGTCTTTTTGTCATCATCTCTATAAATAA
ATAAATTGCATGCTGTCATACAAAGTATACATAGCACTAGACATTGTCAC
CCACTTGTTCAAAAGCATTGTTTCCTTTCCAAATCACTGCTACTTTCCTT
TCTCTAATTAACCTAATGCAACATGCCCATCTGATGTTTTTAAAAATCCA
ATTTTTTTCACCCCACTTGAATAAACCCACATTTATATTACTTTCTTGTG
TACTCCTCTTATTTATCCCCCTTTTTGTTATCAATCTCACTTTATGCTAT
TATCGCCATATATGTTACGCCTCTGTTTTTTACTCCACCCCTTCCCTTCC
TGTTTTATTTTCTGTTCTATCACCTCGCCTCCACCCCTATCTACCCCCCT
CCTTCATCCATTTTTTTCGCCCCCTTTATCTTTCTCCTTTTATACTTCGC
CTCATTCTACTTCTCTCTGCCCCTGTATTTTTTTCCCCCTATCGTTTATC
TTACTCCCCTTTATTTACTTCCCCCCGCCCTCTCTCTATTTTTCTCCCGC
CTTTTTATCCCTTCCTTTTTTTTTTTATCCCTCTCTTCCCACTCTCATTT
CTCTTCCCCCCCCCCTTCCATTCCTTATTTCCTCCTCAACCCCCCCTCTA
TCCACTACACTCTTTTTCCCCTTTATTTTTTCTTCTTTCCTTCTTCTCCT
CCTTCTTTCATCCCAAATTCCCCCTTTTTCCTCTTCTCTCTCCTCTGTAC
TTTTATAATCTACTTCCCTCCACTTCTCCTAACTCTTTCTCANCCCATTA
CTTCTTCTCTTCTTTTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCAAAGGCAGTGCAGCTGCATCACAGAAGCTGCATCTCACCA
ACCTACAGACAGTATCCATCTATTCTTCACTTCTCCTCCCTTTCTATTTT
TTCCTTCCTTTCTGCCTTCTTCCCTTCCTTTCTTCAATTTGATCTTTCCA
AAAAGATATCAGCCTTTATGAAATGGCAAATCCCCTCTATGTGCCATAAC
CACAGAGAAGCACCTTTCTTTTTTCTCTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCATTTCTTTCCTTTTCTTTTCTTTTCCTTTCTTTTT
TCTTTCCCCCCCCCCCCCTCTTTTGTTTTTTGTCGCTTCCTTTTTTTGTC
CTCCCATTTTAAAATTCATCCTATCTACCCCACTTACTCATTCATTCAAT
TTCTCGTACTTCTCCCCTTTCTTCTCTTTTTTTTTTATGTTCCCACCCCT
CTTTTTCTATATTCTTCTCCCCTATCCCCGCTCTCTCCATTTTACCCCTC
CTTTGCTTTTCTACTTCCTCCCTCCTTCTCTTTTTCCCTACCTTCATCTA
CTTTCCGTTTTTCTTTCACACGTCTTCCACCTCTTATATAACTCATTTCC
TTTCCCTTCTATCTCATTCTTTTCCTCTTCCCCCCCTCCTCTCTTTTTCT
CTTCCTCTCCATCTCTCCTACCCGCCACCTCTTTTTCATATNTACTTCTA
CCCTCTCCCCCTCCTTTTTTTATACATGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_k24.g1 MSMg01no266_k24.g1 CHROMAT_FILE:
MSMg01no266_k24.g1 PHD_FILE: MSMg01no266_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:32 2005
         (235 letters)



>mm_chr1_115163828_115164462
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccaaaggcagtgcagctgcatcacagaagctgcatctcaccaacctacagacagtatc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcccaaaggcagtgcagctgcgtcacagaagctgcatctcaccaacctacagacagtatc 505

                                                                       
Query: 61  catctattcttcacttctcctccctttctattttttccttcctttctgccttcttccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catctattcttcacttctcctccctttctattttttccttcctttctgccttcttccctt 445

                                                                       
Query: 121 cctttcttcaatttgatctttccaaaaagatatcagcctttatgaaatggcaaatcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctttcttcaatttgatctttccaaaaagatatcagcctttatgaaatggcaaatcccct 385

                                                                  
Query: 181 ctatgtgccataaccacagagaagcacctttcttttttctcttcttttcttttct 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatgtgccataaccacagagaagcacctttcttttttctcttcttttcttttct 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)