BAC Information

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BAC

Clone NameMSMg01-266P06
Chromosome1 (Build37)
Map Location 12,357,223 - 12,357,537
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266P06.T7 (MSMg01no266_p06.b1)MSMg01-266P06.TJ (MSMg01no266_p06.g1)
ACCAG407805AG407806
length724725
length of high quality
(start - end)		318 (44 - 361)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no266_p06.b1 PHD_FILE: MSMg01no266_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:53 2005CHROMAT_FILE: MSMg01no266_p06.g1 PHD_FILE: MSMg01no266_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGCATGCCCTTTTCTGGCTTCTGTGGGCACTGCCAACATGTAGTA
CACAGACATTTGTATAGGCAAAATGCCAATACACTTAAAACAAAACAAAC
ATTTTAAAAAGAATTGTTTTACCTGGATATCTTGTCCTTTTCTTGTTTCA
ATCTAAGTTTCTTTTTAAATAGAAGAGCATATTTATTTGATGCAATAAGT
CATATGCCTAATTTTAATAATTGGCAACGACTACATGAGGGTATCATCTG
GCTGTTTACATCCAAAGGCAGAGTGTGGTATTCATAAGTGCTTATAAATA
ATATATGTTTCTTATCACACCACCCCCGCCTGTGAATTTTTCACTCTGCC
ACCTACAGTGAATACATAAACTCAAATTATTAGTTAAATAATCTCTAACC
ACAGAAAAAGTACACTGCTATTACCCCATGATATAGCACAGGCTTCAAGT
TAGTTAACACTTTGCATTGCAATTGTGTCGGAATTCCTGAGTTTATTAAT
GTATGTGGTTTTGTCCAGATTCTAGTTTCTTCATGACTAAAACTACTCCC
TGCCGATAAAAATAAAAATTCACCATTCTGAATACAGTTACCAAATTATT
GTTTAGTGGTTTCGAACAATTACTTTATTTTCTAAACTTAATTTCCTTCC
TCTCTGAGGTCTAGCATTCCCTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGAGCCCCGTTTTT
GAATGGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTATAT
ATATATATTGGATATTAGTCCCATATCTGATTTAAGAAGGTAAATATTCC
TTCCCAATCTGTTGGTGGCTACCCCAGCTTGTTTCTTCAGACCATTTGAT
TGGAAAATTGTTTTCCAGCCTTTCATTCTGAGGTAGTGTCTGTCTTTTCC
CCTGAGATGGGTTTCCTGTAAGCAGCAAAATGTTGGGTCCTGTTTGTGTA
GCCAGTCTGTTATTCTATGTCCTCTCATTGGGGAATTGAGTCCATTGATA
TTAAGAGATATTAAGGAAAAGTAAATGATGTTTCCTATTATTTTTGTTGT
TAGAGTTGGCATTCTGTTCTTTTGGCTGTCTTCTTTTAGATTTGTTGAGG
GATTACTTTCTTGCTTTTTCTAGGGTGTGGTTTCCATCCTTGCATTGGTT
TTTTTTTCTGTTATTATCCTTTGAAGTGCTGGATTCGTGTAAAGTTAATG
TGTGAATTTGGTTTTGTCCTGCAATACTCTGGTTTCTCCATCTATGACAA
TTGAAAGTTTGGTTGGTTATAGTATCCTGGTCTGGTATTTTGTGTTCTCT
AACCGTCTGTCTAACTTTTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_p06.b1 MSMg01no266_p06.b1 CHROMAT_FILE:
MSMg01no266_p06.b1 PHD_FILE: MSMg01no266_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:53 2005
         (318 letters)



>mm_chr1_12357020_12357737
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgcatgcccttttctggcttctgtgggcactgccaacatgtagtacacaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgcatgcccttttctggcttctgtgggcactgccaacatgtagtacacaga 263

                                                                       
Query: 64  catttgtataggcaaaatgccaatacacttaaaacaaaacaaacattttaaaaagaattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catttgtataggcaaaatgccaatacacttaaaacaaaacaaacattttaaaaagaattg 323

                                                                       
Query: 124 ttttacctggatatcttgtccttttcttgtttcaatctaagtttctttttaaatagaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttacctggatatcttgtccttttcttgtttcaatctaagtttctttttaaatagaaga 383

                                                                       
Query: 184 gcatatttatttgatgcaataagtcatatgcctaattttaataattggcaacgactacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatatttatttgatgcaataagtcatatgcctaattttaataattggcaacgactacat 443

                                                                       
Query: 244 gagggtatcatctggctgtttacatccaaaggcagagtgtggtattcataagtgcttata 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagggtgtcatctggctgtttacatccaaaggcagagtgtggtattcataagtgcttata 503

                          
Query: 304 aataatatatgtttc 318
           |||||||||||||||
Sbjct: 504 aataatatatgtttc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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