BAC Information

Click to search

BAC

Clone NameMSMg01-267A13
Chromosome1 (Build37)
Map Location 50,125,924 - 50,126,280
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
Downstream geneEG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267A13.T7 (MSMg01no267_a13.b1)MSMg01-267A13.TJ (MSMg01no267_a13.g1)
ACCAG407865AG407866
length749737
length of high quality
(start - end)		358 (386 - 743)661 (77 - 737)
definitionCHROMAT_FILE: MSMg01no267_a13.b1 PHD_FILE: MSMg01no267_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005CHROMAT_FILE: MSMg01no267_a13.g1 PHD_FILE: MSMg01no267_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTGTTAAGAAATAATAGAGTCCAAATGTATCCATGCATATAAA
TTCCATTAATTGTACAATAGTTAGCAAGCTTTGAACTTTTTTGTTCTATT
GTACAACCCATCGTGTCTACCAAAGCTTTAGGGAGTAGGCCCAAGGAGAT
GCTATAAAACTGGCCTGTCTTGTAATTCAAGAATGCTCACCGACAAGGAC
ATTATCATCTTACTTTTTCTCATATGTCCATGAAATAAGAGCTAGTAAAG
CCATAATAGCCTTAATTTAGCGCTTCAATATAATATGTGTGAATAGCACA
CATCTTTTAGAGGTGTTATTGTGCTACAGACAATGGGACCTGGGAGAATG
GAATCAATAAACAAGGCATGAAAAGACAACATAAACGCCATTTGTCTCCA
TTTAAGGACCAGCCTGATTTTTTTTTAGAGGTCATAAGGTACCAGTACCA
GGAACAGACCATAAGTCCATAATACTAGGACATATTATTAGGCCATAATA
TGCCAGCTCTAGGTATAGACCATTAAATCCAGAAACAAGGTCATACCCAT
GCTCCTGTACCCCAAAAAACAGCCAGGGGATAACCACAAAAATGGGGAAA
TATCCTATCTGAAAATGGGTCATCTGTGCTGGGCAGCCTTATCCCCTCGT
ATGATTAAACTTTCATGATATAGGAACCTCTGATCACTTCTGCACCCGC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGACCTTCAAAGGAGCTAAT
ACCAATACTCTCAAAGTATTCCACAAAAAGAAACAGAAGGAACATTACCT
AATACATCCTATGAAGTCACAGTTACTCTGAAATGGAAACCACATAGACT
AAACAAAGAAAAAAATCTTCAGACCAATTTCGCTTATGAATATTGAAGCA
AAAATATTTAATAAAGTTCTCTGAAACCAAACCTCAGAACGAGTTAAAGT
CGTTATTCACCACAATCAAGTAGAGTTGGTCCCAGGGTTACAAGTATTAT
TCAATATAAAAGAATCAGAAAAGCCAATAATGTAAGCCATTGTATAAACA
AACACATAGATAAAAGACCACATGCTCATCCTATTAGATGCTGAAAAGCT
TTTGACAAAATACAACACCCCTTCCTGTTAATTGTCATGGAGAGAGTAGG
AATCCATGGCACATATATAAATCATAATAACAGCAAAATACAGCAAACCA
ATAGCTAACATCAAATTTAGTGAAGAGAAACTAGAAGTAATCCCACGAAA
ATCACAGACAAGATAAGGCTGGACATTTACTCCCTATCTATTCAATGTAA
TATTTGAAGGTCTTGCTAGAACAATTAAACAACAAACATAGATCAAGGGG
ATACAAATTGGAAAGAAGTCAATTTATCACTATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_a13.b1 MSMg01no267_a13.b1 CHROMAT_FILE:
MSMg01no267_a13.b1 PHD_FILE: MSMg01no267_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:59 2005
         (358 letters)



>mm_chr1_50125724_50126480
          Length = 757

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%), Gaps = 1/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacctgggagaatggaatcaataaacaaggcatgaaaagacaacataaacgccatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ggacctgggagaatggaatcaataaacaaggcatgaaaagacaacataaaccccatttgt 260

                                                                       
Query: 61  ctccatttaaggaccagcctgatttttttttagaggtcataaggtaccagtaccaggaac 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctccatttaaggaccagcctgatttttttt-agaggtcataaggtaccagtaccaggaac 319

                                                                       
Query: 121 agaccataagtccataatactaggacatattattaggccataatatgccagctctaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaccataagtccataatactaggacatattattaggccataatatgccagctctaggta 379

                                                                       
Query: 181 tagaccattaaatccagaaacaaggtcatacccatgctcctgtaccccaaaaaacagcca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 380 tagaccattaaatccagaaacaaggtcatacccatgctcctgtcccccaaagaacagcca 439

                                                                       
Query: 241 ggggataaccacaaaaatggggaaatatcctatctgaaaatgggtcatctgtgctgggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggggataaccacaaaaatggggaaatatcctatctgaaaatgggtcatctgtgctgggca 499

                                                                     
Query: 301 gccttatcccctcgtatgattaaactttcatgatataggaacctctgatcacttctgc 358
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccttatccgctcgtatgattaaactttcatgatataggaacctctgatcacttctgc 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space:   261052
Effective search space used:   261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |