BAC Information

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BAC

Clone NameMSMg01-267B05
Chromosome1 (Build37)
Map Location 62,019,485 - 62,019,761
singlet/doubletsinglet
Overlap genePard3b
Upstream geneIcos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267B05.T7 (MSMg01no267_b05.b1)MSMg01-267B05.TJ (MSMg01no267_b05.g1)
ACCAG407895AG407896
length738738
length of high quality
(start - end)
318 (45 - 362)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no267_b05.b1 PHD_FILE: MSMg01no267_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:02 2005CHROMAT_FILE: MSMg01no267_b05.g1 PHD_FILE: MSMg01no267_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTTAAACTTCTTTTTCCCTATAAGGACATGTCCAGCAAGCACC
TGGAATTCTTCTTCATGCAAATGAAACATTCCCATTAACTAAGCACCAGC
CAATGATGTACACTCAACCCCCAAACTCCTATAGATTCCTCAAGGTTTTT
ATAGTGCTTGTGTGTCCCCAGTGAAGAGAGCTGTTTTGCTGAAAACCATC
TCCAGAGAAAGCTACTTTTCCCACACTCAGACTGATTGAATTCCTGTCTA
TGCCACCTGCCTGCTAAGCTTCATTCCTTCCAGTCCAGCCTGGTGCACAA
AGATGCCAGGATAGTTTTTATGGCCCCCCCACACCAGGACCAGCAGTTTA
TTAGCTTTGAAATTAGCCATGTCAATCAAAAAAGAAAAAAAATTTAAAAA
TTAGGCATCTTCCCACCCCATCTCACATATATATTATAGCAAGGTACATA
TATACACCTTTATTATTATAGAATATTATACAATGTGGTATATTGTAAAA
GAATTTGAGCAAGTCTAAAAGAAACAAAAGACTGAAAAATCATATTGCTG
TTAAATAATTATTAATAGTTATTTAAAAATAAAATAACTAGCTCTTGTTA
TCATTGTGTATAACTAGATATGATGTCAAACTTAGTCCATATATATTGAT
TTCAAGTAGAACATGTTCAGAGTTAAGATGGAGGGATG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTAGACTATGCTGGCATCTTA
ACTCAGAGATCACAGAGATCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTC
TGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTGACTCCC
AAGTGCTGGGATTAAAGGTGCCTGTCACCAATGCCCAGGCAATATTTTGC
ACCTTTAGTTTTGGTGGTGAACATGAAGCATCTGGATTTGTCACCCAGGT
TACAAGTACAGAAAAGAAACTAGAGAAAATCACGGGGCTGCTAGCAATGA
CTCTTTTCTGCTGTTTATTTATAAACCCCTACCCTCGCTATCTTTGTTCA
GTGAGTACTGGATATTCTCAATTTATCTTAAGAGACCATAGTGTCAAAAC
AGCATTTTCCATGTATTCAAACTCTTGTTGGACTTGTGAAGTCACTTCTA
AAAAATGCCCTAGGTGAAATAGTTCTCCAAGGAACATAGAGCACCCTTTA
AAGTTAAGGGTAGAACCTGTATAGTACTAATTAAGTCTCATTCCAGTCAT
AGTAATGAAGCTGCCAGGGGCCTCACAGCCAGGAGTCCTCACATGCTGGG
GTACCATGCTGAGCTCCTGCAGAATCTACTAACAGCAATTCAGCTTGGTT
TGTGACAGCTTTTCCTCTTTTCTGTCTAGAACAAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_b05.g1 MSMg01no267_b05.g1 CHROMAT_FILE:
MSMg01no267_b05.g1 PHD_FILE: MSMg01no267_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:02 2005
         (290 letters)



>mm_chr1_62019275_62019964
          Length = 690

 Score =  482 bits (249), Expect = e-140
 Identities = 274/287 (95%), Gaps = 10/287 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctagactatgctggcatcttaactcagagatcacagagatctgcctctgcctctctg 60
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 211 actctagactttgctggcatcttaactcagagatcacagagatctgcctctgc--ctctg 268

                                                                       
Query: 61  cctctctgcctctctgcctctctgcctctctgcctctctctctgcctctctgcctctgac 120
           |||||||||||||    ||||||||||||||||    ||||||||||||||||||||| |
Sbjct: 269 cctctctgcctct----ctctctgcctctctgc----ctctctgcctctctgcctctgcc 320

                                                                       
Query: 121 tcccaagtgctgggattaaaggtgcctgtcaccaatgcccaggcaatattttgcaccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccaagtgctgggattaaaggtgcctgtcaccaatgcccaggcaatattttgcaccttt 380

                                                                       
Query: 181 agttttggtggtgaacatgaagcatctggatttgtcacccaggttacaagtacagaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttttggtggtgaacatgaagcatctggatttgtcacccaggttacaagtacagaaaag 440

                                                          
Query: 241 aaactagagaaaatcacggggctgctagcaatgactcttttctgctg 287
           ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aaactagagaaaatcacggggctgctagcaatgactcttttttgctg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)