BAC Information

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BAC

Clone NameMSMg01-267E09
Chromosome1 (Build37)
Map Location 45,967,069 - 45,967,371
singlet/doubletsinglet
Overlap geneSlc40a1
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644
Downstream geneLOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267E09.T7 (MSMg01no267_e09.b1)MSMg01-267E09.TJ (MSMg01no267_e09.g1)
ACCAG408040AG408041
length739720
length of high quality
(start - end)
317 (45 - 361)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no267_e09.b1 PHD_FILE: MSMg01no267_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:17 2005CHROMAT_FILE: MSMg01no267_e09.g1 PHD_FILE: MSMg01no267_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGGCCATTCACCAGCATTCCATTAATGATTACTGAAATTCTGCT
CTGTAAGAGGCCTTTCCATAATGCTTCCGGAAAGAAGTTTAAAACCTCAT
ATGTGAGTCAAAGTATAGAGTAAATGCAAACAGCTACAGAAGACTTTTGA
AGGATGTTTCTTACAACCACTCTGTCTTTAGAAGAGTGTCTTTGTCTGTA
AGGCAATTCCCTAGCATGCAGAAGGCTCTGGGCTTGATCCCCAGTAACAC
ACACACACACACACACACACACTCTCTCACACAGACACACATGGAAAGGG
GGAAAGACTTATATTTATTCTCACCACCCCCCCAACTCAGAATTAGAGGG
CTCACTTGACATGCATGACCCCCCAGGGTTATCTCCCAACACACCACAGA
CACACAACTTAGGAAGAAAAACCCAAAACACTATACACACACACACACAC
ACACACACATATACATGCAAACATATAGTTTAAACTATTAAGTGAAATTT
CATGTCTAGAGAGTATATTCTATAGATAAAAATAAAAAATAAAGTAGGTT
TTGCCTAAATTAACATCTGTAAAGTACTTCAGATAACTTATTGTTGAATT
CTCTACACTAGGTTTCTAAAATGATGCTTGTAATTTTGTAGTATGCAGAA
AGAGTGTTCTTACCGATTCTAGCAGCATTGACTCCTGCA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAACACCTGAAAAACTGTTCCGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATACTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCTAAGGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGTAA
ATCAGTCTGGCCATTTCTTAGAAAATTGGACATGGTACTACTGGAGGATC
TTGCAATACCTCTCCTGAGCATATATCCAGAAGATGTTCCAACTAGTAGG
AAAATAACATGCTCCACATGCCCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTACTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCANATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGTTACAATTTG
CAAAACACATGAAACTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_e09.b1 MSMg01no267_e09.b1 CHROMAT_FILE:
MSMg01no267_e09.b1 PHD_FILE: MSMg01no267_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:17 2005
         (317 letters)



>mm_chr1_45966865_45967581
          Length = 717

 Score =  555 bits (287), Expect = e-162
 Identities = 302/313 (96%), Gaps = 10/313 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaggccattcaccagcattccattaatgattactgaaattctgctctgtaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattcagaggccattcaccagcattccattaatgattactgaaattctgctctgtaagt 264

                                                                       
Query: 65  ggcctttccataatgcttccggaaagaagtttaaaacctcatatgtgagtcaaagtatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcctttccataatgcttccggaaagaagtttaaaacctcatatgtgagtcaaagtatag 324

                                                                       
Query: 125 agtaaatgcaaacagctacagaagacttttgaaggatgtttcttacaaccactctgtctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaaatgcaaacagctacagaagacttttgaaggatgtttcttacaaccactctgtctt 384

                                                                       
Query: 185 tagaagagtgtctttgtctgtaaggcaattccctagcatgcagaaggctctgggcttgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaagagtgtctttgtctgtaaggcaattccctagcatgcagaaggctctgggcttgat 444

                                                                       
Query: 245 ccccagtaacacacacacacacacacacacacactctctcacacagacacacatggaaag 304
           ||||||||||||||||||||||||||||||||||          ||||||||||||||||
Sbjct: 445 ccccagtaacacacacacacacacacacacacac----------agacacacatggaaag 494

                        
Query: 305 ggggaaagactta 317
           |||||||||||||
Sbjct: 495 ggggaaagactta 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)