BAC Information

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BAC

Clone NameMSMg01-267L14
Chromosome1 (Build37)
Map Location 114,228,870 - 114,229,166
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897
Downstream geneLOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267L14.T7 (MSMg01no267_l14.b1)MSMg01-267L14.TJ (MSMg01no267_l14.g1)
ACCAG408363AG408364
length706733
length of high quality
(start - end)		314 (45 - 358)299 (77 - 375)
definitionCHROMAT_FILE: MSMg01no267_l14.b1 PHD_FILE: MSMg01no267_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:51 2005CHROMAT_FILE: MSMg01no267_l14.g1 PHD_FILE: MSMg01no267_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGATTTAATAGCTGAGTAGTACTCCATTGTGAAAATGTACCACA
TTTTCTATATCTCTTCCTCTGTGGAAGGACATCTGAGCTCTTTCCAGCTT
CTGGCTATTATCAATGAGGCTGTAATTAACATAGTAAAGCATGTGTCCTT
ATTATATCTTGAAGCATCTTCTGGGATATGCCCTGGAGTGATATTAGTGG
GTCCTCAGGTAGTACTATCTCCAGTTTTCTGAGGAACCGCCAAACTGATT
TCCAGAGTGGTTGTACCAGCTTGCAATCCCACCAGCAGTGGAGGAGTGTT
GGTCTTTCNCTCAACCTCANAGCATNCCCTGTCATCTGAGTTTTTGATCT
AAGCCATTCTGACTCCAGAAGAAAATAATATTAAGGTTGTTTTGATATGA
ACTGGGCACTCACATTGCAAAGTACAAACTAAATACCTCCTCTCTCTTAA
GTTGATTGTGGCAGGGTATTTATTCACAACAGCAGGAAAGTAGTGATAAC
AAAAGTCTTCAATGTAAGAGTTGTACAAGACATACCTGAGACTACTCTGG
AAAATTAAATGACATAGGTTACTGAGATTATTTCTTTTTATTAAGAGACC
TACCAAATTGTCTAGTTTGGACAAAGAAGGTTTCTAGTGATAAAAATGTT
CGTTAC

ACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGCGCATAAGGCT
TGTTTACTAGTTAGGCACAGTGGAACCCAGCGCCATCTTATAATGGCGAT
TGCTCACGGCACAGCTCTCCATAAACGTGCCTATTGCACACTCCATTCTG
CATACAGTCATTAAGCTTGTGTTCTTTCACTTACAGCTCAGAATGTCTGA
TTTTCTTTTGTTGGGTATCCTTAAAGTCCAGCCCCCACTTCAAAGAAAGG
GTAGAAGCATCCAGAAGCTAGCCCTGGGTAACTTCACCTCAGTACAAGTG
CTGCAGTTTCAAACATAACTTGGTCAGGCAACACGGGAGGAGAAGAAGAA
GAAGGAGGAGGAAGAGGAGCAGGAGGAGGAGGAGGAAGACGAAGAAAGAG
GAAGAGGAACAGGAAGAAGAATCTGGGAGGCTCATTCTTCACAATTTGTG
CAACTGACCTAATTGTGGCAGAATTGAGTAACTACCATGTTTTATAAAGA
CATGCTGTGCATCAACACAGTGAAAAAGAGGAATCTCTTTCCTTCAGTAA
AACATTCTTTGGGGATATGTATTTTCAACAAATCAATTGAAGCACCTTTT
AAACAAAATTATGATTTTATGTCTCATTATTAGACATAAATGTGGATCCG
TGGGACTCTCAGAGACTAACCCACTAACCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_l14.g1 MSMg01no267_l14.g1 CHROMAT_FILE:
MSMg01no267_l14.g1 PHD_FILE: MSMg01no267_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:51 2005
         (299 letters)



>mm_chr1_114228670_114229368
          Length = 699

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttgcacttgcgcataaggcttgtttactagttaggcacagtggaacccagcgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 actcttgcacttgcgcataaggcttgtttactagttaggcacagtggaagccagcgccat 260

                                                                       
Query: 61  cttataatggcgattgctcacggcacagctctccataaacgtgcctattgcacactccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttataatggcgattgctcacggcacagctctccataaacgtgcctattgcacactccat 320

                                                                       
Query: 121 tctgcatacagtcattaagcttgtgttctttcacttacagctcagaatgtctgattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcatacagtcattaagcttgtgttctttcacttacagctcagaatgtctgattttct 380

                                                                       
Query: 181 tttgttgggtatccttaaagtccagcccccacttcaaagaaagggtagaagcatccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttgggtatccttaaagtccagcccccacttcaaagaaagggtagaagcatccagaa 440

                                                                    
Query: 241 gctagccctgggtaacttcacctcagtacaagtgctgcagtttcaaacataacttgg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagccctgggtaacttcacctcagtacaagtgctgcagtttcaaacataacttgg 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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