BAC Information

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BAC

Clone NameMSMg01-267L16
Chromosome1 (Build37)
Map Location 187,894,412 - 187,894,732
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267L16.T7 (MSMg01no267_l16.b1)MSMg01-267L16.TJ (MSMg01no267_l16.g1)
ACCAG408367AG408368
length761719
length of high quality
(start - end)		325 (45 - 369)573 (77 - 649)
definitionCHROMAT_FILE: MSMg01no267_l16.b1 PHD_FILE: MSMg01no267_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:51 2005CHROMAT_FILE: MSMg01no267_l16.g1 PHD_FILE: MSMg01no267_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTACTTGGCTGCACAATGATGCTTGCACAAAAATAAACTATAACC
AAAAAATTAGGGTTGTATCCCTAGTTCTTATGAAAGAAAGTCTAATGGAC
AATCCAATGCTCACGTAATCCAGAGAGAAGTAATAATGCTGACATCACCC
CTGACTGCATGTCTAGTGTGTGATAGTCACTATGCAGGCACAACGAACTC
CAGTTCTTGCCCTCCAACACAATTTGGGGTGAATGCAAATTGATATGTCA
AAGATAAACACAGAACAAAAAAGAACTTGTCATTTCTGTTCAAAACAAGT
CGTTATCAATATCTGTGTCTGAAATATATCGCACCCTTGTCACTTGAGGA
GATGATGACATTCCAGTCACAACACATAATATGCTATAGGCAAAGCTGTA
AAGGGGTTTGACACTTCTCAGTAGGGAGAGAAAAGAAGGCTGGGGTCTGG
GAGGAGGAGGAGAGTTACTGTGNGNCTGTGTTGTTACCGGTTTTTTTGTN
TCTTTCCCCCTCCCCATGTTTACTCCCCTTCTTTATTACCCTCCTTTTCT
TTCTATATTTTATCTCATTTTAATTTCCCTCCTTTCTTTTTTTTTTTTTC
TTCCCTCCCCTTTTCTTTTTTCGTTTTTCATTTTCTTCTCTATATTTTCC
CCCTTCCACTAATTTTTTTTCCTCCTTCCTCTATTTTTCCCTTCTCTTTC
TTCCCTTTTTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGGA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCNAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACCACTGAAACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_l16.b1 MSMg01no267_l16.b1 CHROMAT_FILE:
MSMg01no267_l16.b1 PHD_FILE: MSMg01no267_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:51 2005
         (325 letters)



>mm_chr1_187894208_187894932
          Length = 725

 Score =  600 bits (310), Expect = e-176
 Identities = 319/322 (99%), Gaps = 2/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaatt 264

                                                                       
Query: 65  agggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaa 324

                                                                       
Query: 125 tccagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtc 384

                                                                       
Query: 185 actatgcaggcac-aacgaactccagttcttgccctccaacacaatttggggtgaatgca 243
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actatgcaggcactaa-gaactccagttcttgccctccaacacaatttggggtgaatgca 443

                                                                       
Query: 244 aattgatatgtcaaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattgatatgtcaaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaaca 503

                                 
Query: 304 agtcgttatcaatatctgtgtc 325
           ||||||||||||||||| ||||
Sbjct: 504 agtcgttatcaatatctatgtc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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