Query= MSMg01no267_m08.b1 MSMg01no267_m08.b1 CHROMAT_FILE:
MSMg01no267_m08.b1 PHD_FILE: MSMg01no267_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:54 2005
(233 letters)
>mm_chr1_137353527_137354159
Length = 633
Score = 418 bits (216), Expect = e-121
Identities = 228/236 (96%), Gaps = 8/236 (3%)
Strand = Plus / Plus
Query: 1 ggcatgcaccaccaggctggtagacctcacactgactagggcaatgggttcagcttttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatgcaccaccaggctggtagacctcacactgactagggcaatgggttcagcttttcc 260
Query: 61 catcctttacaatcctagtcctatgtgggaggttagagtagggctcataggtctgttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctttacaatcctagtcctatgtgggaggttagagtagggctcataggtctgttttg 320
Query: 121 gaagaggacttctgggccacattctctttgccttggacaatcctctagtttctgagatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaggacttctgggccacattctctttgccttggacaatcctctagtttctgagatgg 380
Query: 181 ttttagaagctcc----tttttctttggggtgacaagtatctcttctcctggatga 232
||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagaagctccacagt----ctttggggtgacaagtatctcttctcctggatga 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no267_m08.g1 MSMg01no267_m08.g1 CHROMAT_FILE:
MSMg01no267_m08.g1 PHD_FILE: MSMg01no267_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:55 2005
(284 letters)
>mm_chr1_137503556_137504239
Length = 684
Score = 518 bits (268), Expect = e-151
Identities = 280/284 (98%)
Strand = Plus / Minus
Query: 1 cagttcgacacaccagaggaaggagcccaccccagtcaagctgttatcccgaaacacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 cagttcgacacaccagaggaaggagcccaccccagtcaagctgttatggagaaacacaaa 425
Query: 61 ttccagggcctcctgaaggtcggatgcctcctggctgccagggaaaagatcaaagaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttccagggcctcctgaaggtcggatgcctcctggctgccagggaaaagatcaaagaaaca 365
Query: 121 tcatctccaaaccccctaggtgtctggagccggatgaaggggaagcttcggggacttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcatctccaaaccccctaggtgtctggagccggatgaaggggaagcttcggggacttcct 305
Query: 181 ctccagtgtgcagccccgtgcagagcatgcggtcctcagctactcctggagtcattagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctccagtgtgcagccccgtgcagagcatgcggtcctcagctactcctggagtcattagct 245
Query: 241 tttcctcatcccatccgcagagtcaaccaatcacagccacagta 284
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 244 tttcctcagcccatccgcagagtcaaccaatcacagccacagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
