Query= MSMg01no267_n10.b1 MSMg01no267_n10.b1 CHROMAT_FILE:
MSMg01no267_n10.b1 PHD_FILE: MSMg01no267_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:59 2005
(280 letters)
>mm_chr1_73048021_73048698
Length = 678
Score = 468 bits (242), Expect = e-136
Identities = 261/268 (97%), Gaps = 4/268 (1%)
Strand = Plus / Plus
Query: 8 ttccttgcgtag-ctccacagtccatcctttcagtcacacccgattgtgctggggttgac 66
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 208 ttccttgcgtagtc-ccacagtccatcccttcagtcacacccgattgtgctggggttgac 266
Query: 67 aagcgagcaagagtacccactgcagagtaacttgcgttgctctggccttgcctgaagaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagcgagcaagagtacccactgcagagtaacttgcgttgctctggccttgcctgaagaat 326
Query: 127 ttgatgacagagttaggatttagatcccagtctttgctttcctgagcaagtgtctcttag 186
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 327 ttgatgacagagttaggatttagatcccagtct--gctttcctgagcaagggtctcttag 384
Query: 187 tcttggaggtttggtttcctggccttgttgatctgtgctgtcttatcccaggtgactttg 246
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tcttggaggtttggtttcctggccttgttgatttgtgctgtcttatcccaggtgactttg 444
Query: 247 gttgtcagttatgtagggggttggagtg 274
||||||||||||||||||||||||||||
Sbjct: 445 gttgtcagttatgtagggggttggagtg 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 678
Length adjustment: 9
Effective length of query: 271
Effective length of database: 669
Effective search space: 181299
Effective search space used: 181299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no267_n10.g1 MSMg01no267_n10.g1 CHROMAT_FILE:
MSMg01no267_n10.g1 PHD_FILE: MSMg01no267_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:00 2005
(615 letters)
>mm_chr1_73208286_73209301
Length = 1016
Score = 1104 bits (571), Expect = 0.0
Identities = 604/615 (98%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 1 cagggcttggaatgacagcactcactcggccacactgggctgggcacagcatcaggaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cagggcttggaatgacagcactcactcggccacactgggctgggcacagcatcaggaagg 756
Query: 61 gtactgtctgctttgtcagcgcagcttgcaccctttcctcctcagcctctctgacctaga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gtactgtctgctttgtcagcacagcttgcaccctttcctcctcagcctctctgacctaga 696
Query: 121 ttattttcccaggaagatagtttcaaaggcttctttttaaagtcaggctggagcctttag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttattttcccaggaggatagtttcaaaggcttctttttaaagtcaggctggagcctttag 636
Query: 181 ctttccataggcttattcagttgctatgtgctgagtatcaagacaatatcgtgccaagac 240
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 635 ctttccataggcttattcagttgctatgtgctgagtaccaagacaatattgtgccaagac 576
Query: 241 tgccaagagctgtgagaagtgactccccatagactccttcttggtccatcacctagtacc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 575 tgccaagagctgtgagaagtgactccccatagactccttcttggtccatcacctagtagc 516
Query: 301 cttcatcctatggatctgaagcatccacatgagccacagtttgtgaataatgagttcata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 515 cttcatcctatggatctgaagcatccacatgagccacagtttgtgaataatgagtccata 456
Query: 361 agttgggacactgtccaagaatacctaaggggctcttgacaatttgagacagaaataaag 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 agttgggacactgtccaagaatacttaaggggctcttgacaatttgagacagaaataaag 396
Query: 421 aatgtcaaagactccagttctctggaaacccataagaagccattgtcagtcctagctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 395 aatgtcaaagactccagttctctggaaacccataagaagccattgtcagtcttagctcag 336
Query: 481 agaggcaaaagaagagagggcagcaagcacc-tgaatgtaagagtagttcttagagctgt 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 335 agaggcaaaagaagagagggcagcaagcaccttgaatgtaagagtagttcttacagctgt 276
Query: 540 agccccaacaaggagggaacttatggaagacatcccctgtagtcattctccttaatggaa 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 agccccaacaaggagggaacttatggaagatatcccctgtagtcattctccttaatggaa 216
Query: 600 gctcatcagtagagt 614
|||||||||||||||
Sbjct: 215 gctcatcagtagagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
