BAC Information

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BAC

Clone NameMSMg01-268C04
Chromosome1 (Build37)
Map Location 94,135,148 - 94,279,221
singlet/doubletdoublet
Overlap geneLOC100040419
Upstream geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
Downstream geneLOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C04.T7 (MSMg01no268_c04.b1)MSMg01-268C04.TJ (MSMg01no268_c04.g1)
ACCAG408660AG408661
length733736
length of high quality
(start - end)
688 (46 - 733)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no268_c04.b1 PHD_FILE: MSMg01no268_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:22 2005CHROMAT_FILE: MSMg01no268_c04.g1 PHD_FILE: MSMg01no268_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,278,674 - 94,279,221)(94,135,148 - 94,135,434)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCAAAGACCAGAGTGAGTGAGTTAGGTCCAGTTAGGAACTGGA
ATTACAGACTGTTGGAAGCTGCCACATGGGTGCTGGAAATTGAGTCCAGG
TTCTCTAGAAGAGCACCCAGTTCTATCACCCCTAAGCCATCTCTCCAGCC
TCCACACCCAGCACTTTATCATGAGTACAGGAGATTGAACTCAGGCCCTC
TTGCTTGCAAGACGATGGAGCCACCTCCCTGACTCATCAACCCATTTCTC
TAAGCACATGTTGAAGCATCCACAGGAGACTGTGTCTTCTGGTTTTCATG
GGTCTGGGATTTCAGCTAGCCTCATAGTGAATGGTGCAGATCCCTACAGT
CTACTGGTTCACTGTCGGGGTTACAGATCACGTGGGAATCTCCAGCTGGA
AGCTTTCCCATGCTGCTTGTCCTGAATAGGTTCGTTGCAAACTGAAAGTC
GTTGCTAGATAATTTATTACATAAACTGTTGAGAGTAACTCATTAAAAAT
GGCAAAGCCCTGGAGTGCCTGTTTCCCCTGTTTTGTGGGAGATTGCTTGG
CTTCGTTTCCCCCAAATCTCCTCCCTCCCGAGAACTACTGTAACACGCTT
CCAGAACAGTGGTTTGAAATAACACAAGGAAGTGGGATTTGCATGGCCTC
CGCTGAGCATCATCATGGAGGAGGGAACCAGAG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCGCCTCCAGTGCCTGGACT
CCTTTTTGGCTTCTTAGGGCCACATGGGATGGAGAAGTCACTGTGTTCAA
CCTCTGCTTGCCTCCCACCCCTACCCAAGGCTGTGCTCCTGGGTCTTGGG
TGAGCTCCTGCTTGGGCATCTGAGTGAGCACTTTGAGCTCTTGCTTCTTG
GCTGCATGGTACAGTGAGTCCCCAAATGTGGGTGGGAAGGACATCAGAAC
GAGGCAACTTGAAATAATCCATCAGTCCAATCGCTCTGTTCTTCACCCAG
GGACGAGGCTTTGTTTTTTTCTTGCCCCACCACGCCCTCTGTGAATTAGA
GCTCTCAAAAGGTCCCTTTCCCCGCTAAAGTTTGGTGTGGCTGTATTCCC
AAGTGGGCAGGGTATGTGGTTGGGGGCTCATCAGCACTCAGGGACATGGA
TGTCGGTGACAGGAAGTGGAGTAGATTATGAGTCAATCCATGATGCTTTG
TCTTTGGAGGAGAAGAATGCTTGCCCTAAGAGGTAGACTCCAAAGAGGAC
AAGGCTATGGTCAGCAGAGGAGCCCAAAGCAAGCATGCATGCTACATGCA
TGTATACACACACACACACACACACACACACACACACACGCACGGTATGT
GCACCGTAAGCCAACTGTGCGTGTACGTGCATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c04.b1 MSMg01no268_c04.b1 CHROMAT_FILE:
MSMg01no268_c04.b1 PHD_FILE: MSMg01no268_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:22 2005
         (688 letters)



>mm_chr1_94278134_94279221
          Length = 1088

 Score = 1029 bits (532), Expect = 0.0
 Identities = 544/548 (99%)
 Strand = Plus / Minus

                                                                        
Query: 141  gccatctctccagcctccacacccagcactttatcatgagtacaggagattgaactcagg 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gccatctctccagcctccacacccagcactttatcatgagtacaggagattgaactcagg 1029

                                                                        
Query: 201  ccctcttgcttgcaagacgatggagccacctccctgactcatcaacccatttctctaagc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ccctcttgcttgcaagacgatggagccacctccctgactcatcaacccatttctctaagc 969

                                                                        
Query: 261  acatgttgaagcatccacaggagactgtgtcttctggttttcatgggtctgggatttcag 320
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 968  acatgttgaagcatccacaggagactgtgtcttctggttttcatggatctgggatttcag 909

                                                                        
Query: 321  ctagcctcatagtgaatggtgcagatccctacagtctactggttcactgtcggggttaca 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  ctagcctcatagtgaatggtgcagatccctacagtctactggttcactgtcggggttaca 849

                                                                        
Query: 381  gatcacgtgggaatctccagctggaagctttcccatgctgcttgtcctgaataggttcgt 440
            |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 848  gatcacgtggaaatctccagctggaagctttcccatgctgcttgtcctgaacaggttcgt 789

                                                                        
Query: 441  tgcaaactgaaagtcgttgctagataatttattacataaactgttgagagtaactcatta 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  tgcaaactgaaagtcgttgctagataatttattacataaactgttgagagtaactcatta 729

                                                                        
Query: 501  aaaatggcaaagccctggagtgcctgtttcccctgttttgtgggagattgcttggcttcg 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  aaaatggcaaagccctggagtgcctgtttcccctgttttgtgggagattgcttggcttcg 669

                                                                        
Query: 561  tttcccccaaatctcctccctcccgagaactactgtaacacgcttccagaacagtggttt 620
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 668  tttcccccaaatctcctccctcccgagaactactgtaacacgcttccacaacagtggttt 609

                                                                        
Query: 621  gaaataacacaaggaagtgggatttgcatggcctccgctgagcatcatcatggaggaggg 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  gaaataacacaaggaagtgggatttgcatggcctccgctgagcatcatcatggaggaggg 549

                    
Query: 681  aaccagag 688
            ||||||||
Sbjct: 548  aaccagag 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no268_c04.g1 MSMg01no268_c04.g1 CHROMAT_FILE:
MSMg01no268_c04.g1 PHD_FILE: MSMg01no268_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:22 2005
         (289 letters)



>mm_chr1_94134948_94135636
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcgcctccagtgcctggactcctttttggcttcttagggccacatgggatggagaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcacctccagtgcctggactcctttttggcttcttagggccacatgggatggagaa 260

                                                                       
Query: 61  gtcactgtgttcaacctctgcttgcctcccacccctacccaaggctgtgctcctgggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcactgtgttcaacctctgcttgcctcccacccctacccaaggctgtgctcctgggtct 320

                                                                       
Query: 121 tgggtgagctcctgcttgggcatctgagtgagcactttgagctcttgcttcttggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtgagctcctgcttgggcatctgagtgagcactttgagctcttgcttcttggctgca 380

                                                                       
Query: 181 tggtacagtgagtccccaaatgtgggtgggaaggacatcagaacgaggcaacttgaaata 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtacagtgagtccccaaatgtgggtgggaaggacatcagaacgaggcaacttgaaata 440

                                                          
Query: 241 atccatcagtccaatcgctctgttcttcacccagggacgaggctttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccatcagtccaatcgctctgttcttcacccagggacgaggctttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)