BAC Information

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BAC

Clone NameMSMg01-268C10
Chromosome1 (Build37)
Map Location 33,136,187 - 33,136,464
singlet/doubletsinglet
Overlap genenone
Upstream geneKhdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C10.T7 (MSMg01no268_c10.b1)MSMg01-268C10.TJ (MSMg01no268_c10.g1)
ACCAG408671AG408672
length713721
length of high quality
(start - end)
315 (45 - 359)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no268_c10.b1 PHD_FILE: MSMg01no268_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:23 2005CHROMAT_FILE: MSMg01no268_c10.g1 PHD_FILE: MSMg01no268_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGAGCCCCATTTATTAATGGGGTTATTTAATTTT
CTGGAGTCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCTCT
GATTTCTAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGAT
CCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGGAATTTTGCCCCTATGCCCCTTCGAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCTTTGTCTCTGCCCCCACGCGTAGCTACTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTTGCATTCTTCTAC
ATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTCTCTTTT
TTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTC
AGACACTCCAGAAGAGGGAGTCAGATCTTGTTAAGGATGGTTGTGAGCCA
CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCCGAAGAATAGTCGGG
TGCTCTTACTCACTGAGCCATCTCACCATCCCCGAAAATGCTCTCTTTTT
TCCACTGGATGGT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTCATTTCTTTTAAA
AAAATTAGGCACCTGTAAAAGAGGACTATATATATGTGTAAGGAACACAC
ACATGTGTATAGGTTTTGGCATGTTGGATCATCAAAACATTAACAGAATT
ATTTAATAGCTGAATTGAAGAGAATGTAGGCTAAATAAAAATAGTTTTGT
AACTAAAGATATTCATAACAGCAATCTTTGAAAGATAATTTATTAAAATC
CCTCCACTGGTCATGTTATTTCTATAGCATAGCAAGGGCATTCAATTGTA
ACATTTCTCATNNCTGATTGTACCTCCCCCCCCCATTCAGTTTCTATATT
TCAAGTTTAAGTGTAAGCATAAAACTTACAACAAAAAAATTTAAAGAATT
GAGAGAAATCCTATGGAGGAAATTGATAGTTCTAAGTGCCATTAAAAATA
AAATAAAAAAAAGAACACAATTAAATGACTTAATGATGCAATTCAGAAAC
TTAGCAGACAAGAGCAAACCAAATCCAAACACAGTCAATAGGAAGAAATA
ATAAAAATCAGAACAGAAATCAATAAAATAGAAACCAGGAAAACAATGCA
AATAATCTGTGAATGTAAGAGCTGGTTCATTGAGAAGATAAACTATATCG
ACAGACCCTTAGCCCAACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c10.g1 MSMg01no268_c10.g1 CHROMAT_FILE:
MSMg01no268_c10.g1 PHD_FILE: MSMg01no268_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:23 2005
         (281 letters)



>mm_chr1_33135987_33136666
          Length = 680

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttcatttcttttaaaaaaattaggcacctgtaaaagaggactatatatatgtgtaa 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 478 ttctttcatttctttt-aaaaaattaggcacctgtaaaagaggactatatatatgtataa 420

                                                                       
Query: 61  ggaacacacacatgtgtataggttttggcatgttggatcatcaaaacattaacagaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggaacacacacatgtgtataggttttggcatgttggatcatcaaaacattaacagaatta 360

                                                                       
Query: 121 tttaatagctgaattgaagagaatgtaggctaaataaaaatagttttgtaactaaagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttaatagctgaattgaagagaatgtaggctaaataaaaatagttttgtaactaaagata 300

                                                                       
Query: 181 ttcataacagcaatctttgaaagataatttattaaaatccctccactggtcatgttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttcataacagcaatctttgaaagataatttattaaaatccctccactggtcatgttattt 240

                                                  
Query: 241 ctatagcatagcaagggcattcaattgtaacatttctca 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctatagcatagcaagggcattcaattgtaacatttctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)