BAC Information

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BAC

Clone NameMSMg01-268C24
Chromosome1 (Build37)
Map Location 10,994,454 - 10,994,787
singlet/doubletsinglet
Overlap genenone
Upstream gene4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C24.T7 (MSMg01no268_c24.b1)MSMg01-268C24.TJ (MSMg01no268_c24.g1)
ACCAG408697AG408698
length734733
length of high quality
(start - end)
327 (45 - 371)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no268_c24.b1 PHD_FILE: MSMg01no268_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:25 2005CHROMAT_FILE: MSMg01no268_c24.g1 PHD_FILE: MSMg01no268_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTTGAGACTTGGGTTTTCTTGGGTAAGTTTGTTGTCTTCCTG
CCTTACCATGTAGCTCAGCCTGGTGCTCAAAAGGAGCCCATATTGCTGGA
GACAGTCTATGCCAAGGACATTGTGTTTTTTTTTTTCACTAATACAAAAT
ACATACTTTCCAGGAAAAGACAAACCCTTCGTTTGAAAAGGTTAAATCAT
CTAATTCTTACACTAGTATTCCAGTGGGTTAAATTTAGAATACTGATAGC
AAACATTCTCTGGCAAACAGTTTACAGCAGAAGTTTAGTGACATGGAATG
CTGGCGCCATGCATTTTTCTTTCTTTCCTCCCCCCATCTCCTTAGTGTAG
GATGGACTAAGATCTAGCTTAGCTGCCACTGTGACCGTCTGAGTATCTCT
GTAGGTTGTCTTCTTGCGACACATTTTCAGAGGTTGTGCAAGAAGTGAGG
ATGTCCCTTCAGTGCCCTGTATGCTTCCCGTTGGCCTGCCTTCCATGTTC
CCTTGGAATTTCAGCTTTTTCTTATTTGTGACTGTTACCCCAGAGAAGGA
GTTCTTGGGATTCCAGAGATGGCCCTTTGTTTTATACTGCTGTCTTTCTG
TTAATCATGACAAGGGGGAGGTCTAGGGGAAAGACACTGTATTCATCCGC
CCATGTGCTGGTTCTTGCCAGTATTCCAAGATTA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGCATTGATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGTGNCTTTCTGTCCTTTCGGCACCAGAGTAATAGTGG
CTTCATAAAATGAGTTGGGTAGAGTACCTTCAACATCAATTTTGTGAAAT
AGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTC
TGCACTAAACCCGTCTGGTCCTAGGCTTTTTTTTTTTGGCTGGGAGACTA
TTAATAACTGCTTCTATTTCTTTAGGTGATATAGGACTGTTTAGATGGTC
AACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAG
GATCTGATGATGTTTTGGATTTCTTCAGGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c24.b1 MSMg01no268_c24.b1 CHROMAT_FILE:
MSMg01no268_c24.b1 PHD_FILE: MSMg01no268_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:25 2005
         (327 letters)



>mm_chr1_10994263_10994989
          Length = 727

 Score =  580 bits (300), Expect = e-170
 Identities = 320/334 (95%), Gaps = 12/334 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctttgagacttgggttttcttgggtaagtttgttgtcttcctgccttacc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggaattctttctttgagacttgggttttcttgggtaagtttgttgtcttcctgccttacc 251

                                                                       
Query: 64  atgtagctcagcctggtgctcaaaaggagcccatattgctggagacagtctatgccaagg 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgtagctcagtctggtgctcaaaaggagcccatattgctggagacagtctatgccaagg 311

                                                                       
Query: 124 acattgtg------------tttttttttttcactaatacaaaatacatactttccagga 171
           ||||||||            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acattgtgtttttttttttttttttttttttcactaatacaaaatacatactttccagga 371

                                                                       
Query: 172 aaagacaaacccttcgtttgaaaaggttaaatcatctaattcttacactagtattccagt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 372 aaagacaaacccttcgtttgaaaaggttaaatcatctaattcttacactagtattccagc 431

                                                                       
Query: 232 gggttaaatttagaatactgatagcaaacattctctggcaaacagtttacagcagaagtt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggttaaatttagaatactgatagcaaacattctctggcaaacagtttacagcagaagtt 491

                                             
Query: 292 tagtgacatggaatgctggcgccatgcatttttc 325
           ||||||||||||||||||||||||||||||||||
Sbjct: 492 tagtgacatggaatgctggcgccatgcatttttc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)