Query= MSMg01no268_p05.b1 MSMg01no268_p05.b1 CHROMAT_FILE:
MSMg01no268_p05.b1 PHD_FILE: MSMg01no268_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:19 2005
(318 letters)
>mm_chr1_54384174_54384892
Length = 719
Score = 584 bits (302), Expect = e-171
Identities = 311/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 5 gaattcctactaagtgataaaagataaagtactttaactgacggtaggctgcgcttca-t 63
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 205 gaattcctactaagtgataaaagataaagtactttaactgacggtaggctgcacttcact 264
Query: 64 gttcctcggaggctacaagatggtgagtcctaaggatgaagtaaaacttattattccata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttcctcggaggctacaagatggtgagtcctaaggatgaagtaaaacttattattccata 324
Query: 124 aatgccgcggaccggcctcagtcagccaccctcaatctgtgggagaaaattgggttcccg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgccgcggaccggcctcagtcagccaccctcaatctgtgggagaaaattgggttcccg 384
Query: 184 gtatggtgggcaatggagttggtgacgaaaaaggggggtgacaaacagatatgaaaacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatggtgggcaatggagttggtgacgaaaaaggggggtgacaaacagatatgaaaacag 444
Query: 244 agagagtgtgtggtatctgaatgcaatgtgtctcaaagcgagtaccagtcttatgagtga 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagagtgtgtggtatctgaatgtaatgtgtctcaaagcgagtaccagtcttatgagtga 504
Query: 304 cttttacacaaaac 317
||||||||||||||
Sbjct: 505 cttttacacaaaac 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_p05.g1 MSMg01no268_p05.g1 CHROMAT_FILE:
MSMg01no268_p05.g1 PHD_FILE: MSMg01no268_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:19 2005
(287 letters)
>mm_chr1_54556004_54556690
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 tttctactttcctctttacctgtgttctgtccctcttcctttatggcctcatgcctacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttctactttcctctttacctgtgttctgtccctcttcctttatggcctcatgcctacca 428
Query: 61 atgcccctagttttgtatacatacacacagttctgctacagtgaaagaaaataattgggg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 atgcccctagttttgtatacatacacacagttctgctacaatgaaagaaaataattgggg 368
Query: 121 aagataagtgtagctatttgatttttcagcctttgaatagattattttttcattaaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagataagtgtagctatttgatttttcagcctttgaatagattattttttcattaaatta 308
Query: 181 ttttttctgaaaaagaaaagatgaactcttctttagattattcccctgaaagaggataaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 ttttttctgaaaaagaaaagatgaactcttctttagattattcccctaaaagaggataaa 248
Query: 241 cagtaaactgtggtcattgtcttgagagaatgccatagtgttgccta 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cagtaaactgtggtcattgtcttgagagaatgccatagtgttgccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
