BAC Information

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BAC

Clone NameMSMg01-268P19
Chromosome1 (Build37)
Map Location 145,900,960 - 145,901,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2
Downstream geneRgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268P19.T7 (MSMg01no268_p19.b1)MSMg01-268P19.TJ (MSMg01no268_p19.g1)
ACCAG409242AG409243
length745745
length of high quality
(start - end)
319 (46 - 364)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no268_p19.b1 PHD_FILE: MSMg01no268_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:21 2005CHROMAT_FILE: MSMg01no268_p19.g1 PHD_FILE: MSMg01no268_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCTTTTGTCTCTCCCCCCACGCGAAGTTCTTTGA
TCCATTTAGATTTGACCTTAGNCACCCGAGATAAGAATGGATCCATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGC
TCTGTAGTAAAGCTTTAAGTCAGGCATGTTGATTCCACCAGAGGTTCTTT
TACCCTGAGAAAAAGTTTTGTTATCCTAAGTTTTTTGCTATTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAAAAATAGTTGCCTTAATAAATG
CTATAGGGATAACTGACTTTTATAGGGATAGTCTTTTGGCAAGATATGTC
TTATTCTTTATGTAAATATGAATTCTAAGAGAACTAAATATTTTAACTTT
ATAATTAAGTTGTATCAGTGATTTAGACATTGTGACACATGTCTGTAATT
ACAGCCCTTGTGACAATCAGATAGGAAGATCATGCCTTTGAGGCCAGCCT
GAGCCACACAGTGAGTCTAAGAGCAGACTGTCTCCAAAACAGTGTGTGTG
TGTGTGTGTGTGTGTGTTATCTAAGTGTCCCACCCATATGCCTTTGGAGA
CAAAGAGAAGAGGATCTCTGAGAGTTAGAGATATGGTATACATAGTAAGT
TCCAGGCAAACCAGTAAGTCAGGCACTAATGACACACATGCACCCACGTG
TGTACGCATGCGCGCGCACACACAAACACACACATGATAAGGTAGGGAGC
AGTTCAGCTCTCTGCCACCCCTGGTATATGCTATCAGCTCCTCGTGGCTG
GAAGTCTGGGGTAAAGGTCAGAAGAGAGGTTCCAAGAGACAGCCTATTCT
TTGCCTCTGCTAGCTTTATCAGTTCTTTATGGCTAGTGTCTGTTGGTTTG
ACATCTATTCTAATTAGCACATGTAATGTTACACGAGTTTCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_p19.g1 MSMg01no268_p19.g1 CHROMAT_FILE:
MSMg01no268_p19.g1 PHD_FILE: MSMg01no268_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:21 2005
         (292 letters)



>mm_chr1_145900905_145901596
          Length = 692

 Score =  507 bits (262), Expect = e-148
 Identities = 286/296 (96%), Gaps = 4/296 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaaaatagttgccttaataaatgctatagggataactgacttttatagggatagtct 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctaaaaaatagttgcctcaataaatgctatagggataactgacttttatagggatagtct 292

                                                                       
Query: 61  tttggcaagatatgtcttattctttatgtaaatatgaattctaagagaactaaatatttt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 291 tttggcaagatatgtcttattctttatataaatatgaattctaagagaactaaatatttt 232

                                                                       
Query: 121 aactttataattaagttgtatcagtgatttagacattgtgacacatgtctgtaattacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aactttataattaagttgtatcagtgatttagacattgtgacacatgtctgtaattacag 172

                                                                       
Query: 181 cccttgtgacaatcagataggaagatcatgcctttgaggccagcctgagccacacagtga 240
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 171 cccttgtgacaatcagataggaagatcatgcctttgaggacagccggagccacacagtga 112

                                                                   
Query: 241 gtctaagagcagactgtctccaaaacagtgtgtgtgt----gtgtgtgtgtgtgtg 292
           ||| |||||||||| ||||||||||||||||||||||    |||||||||||||||
Sbjct: 111 gtccaagagcagaccgtctccaaaacagtgtgtgtgtatatgtgtgtgtgtgtgtg 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)