BAC Information

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BAC

Clone NameMSMg01-269H13
Chromosome1 (Build37)
Map Location 95,321,048 - 95,481,250
singlet/doubletdoublet
Overlap geneHdlbp, Sept2, Farp2
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g
Downstream geneStk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269H13.T7 (MSMg01no269_h13.b1)MSMg01-269H13.TJ (MSMg01no269_h13.g1)
ACCAG409577AG409578
length720715
length of high quality
(start - end)
190 (126 - 315)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no269_h13.b1 PHD_FILE: MSMg01no269_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:57 2005CHROMAT_FILE: MSMg01no269_h13.g1 PHD_FILE: MSMg01no269_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,321,048 - 95,321,237)(95,481,006 - 95,481,250)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGTGGATTCCACTGGTTTCTGATAACAGTGATCAGTATAGGCAGAA
GACAGTCCAGGGATTTGCACCCAAGGCAAGAGGCCAACGATAACAAAAGT
GCATCCTGGCCTGGATACTAACGTCAGGGACAGTCAGAGGACAGTTGAAG
GCTGGACCTCACCTTGGATTACAGTGAAAAGTAAAAATCACTTCCCATAA
AACATTTCTTACAGGGCTGAAGAGATGGCTCAGTGGTTAAGAGGACTGGC
TGCTTTTCCAGAAGACCCTATTTCAATTCCCAGCGATCACATGGCAGCTC
ACAACTGTAATTCCNGTCCTCAGCCCANCCCCACGCTCAGACAGACATAA
CAAATCAACTATTTAAAACAAAACAGAAATATCCAATTTGCGGTTCTTAG
CATGGAAGAGGGCAGAACATGAACTGGAGCTAATTATCAGATCCTAACCA
ACACTTTGGACTCTTGAAAGCCGCCAGTGACTTTCATGTGTGGTCGGTCA
GGAATCACTACAGCATGAACCCCATTACTGAGTGTCCCAGGCCCATAGGG
AGTGAGGCTGCAAGGATTCCCGAGTCTGGCCACACAGAGTTACCTCCTGA
TGACTTTTAAAGTCTAGAAATGACAGCCCATCTGTGAATCCTGTATCCAG
GGATATGGGCATCTCTGTTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTCTTCAGTTTCAGCATCTTTCCCA
GTGACTGGTTATTTAGACCACACCCAGGCTGGAGACACTGGCTAACACCA
GGAGGTGAACAAAAAGAAAGGCTCAATGTTCATTCTGGGCTCAGTGGCTT
TGGGCCAACTGTACCGTTTTCTAAAGCTCACGAACAGTGAAGAGAGGTGT
AGCTTGTGACAGGACATGGCAGCCTTTGGTTCTCAGCCCAAGCACCTGCA
CACAACAACCTACCAGGATTTTTTTGGTCAGGGCACTATGAGCAGGAACT
CAGAATTTGNATTGGATCANGAACCCAGNCCACATCTGTTTTAAATTTCT
CCAAATTATGACAAATGTGAAACATAACAAAAAATGTCTGTGGTGGATCT
GAGATGGTGGGATGCTGTTTTTGCCCCTTCTCCCACTGGAAATTATGTGG
GGCTATGGGATAAGGGAAAGACCCCACACACACCCCTGGCTGGCCTCTTG
GGTGTCAGTCTAGGCCTTAGGACCCAAGGCAGCATTGCTAGCCTGGCTTT
CCCTACAAGACAATGCTAATATAGGATGTGGAATATTCTAACCAAAATCT
AACAGGCAGACACAGTGAGCAGATCATGCCTGTAACCTGACTTTGAAAAA
CCAAACCTAACTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_h13.b1 MSMg01no269_h13.b1 CHROMAT_FILE:
MSMg01no269_h13.b1 PHD_FILE: MSMg01no269_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:57 2005
         (190 letters)



>mm_chr1_95320848_95321437
          Length = 590

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagaggccaacgataacaaaagtgcatcctggcctggatactaacgtcagggacagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagaggccaacgataacaaaagtgcatcctggcctggatactaacgtcagggacagtc 260

                                                                       
Query: 61  agaggacagttgaaggctggacctcaccttggattacagtgaaaagtaaaaatcacttcc 120
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 agaggacagctgaaggctggacctcacctcggattacagtgaaaagtaaaaatcacttcc 320

                                                                       
Query: 121 cataaaacatttcttacagggctgaagagatggctcagtggttaagaggactggctgctt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaaacatttcttacagggctggagagatggctcagtggttaagaggactggctgctt 380

                     
Query: 181 ttccagaaga 190
           ||||||||||
Sbjct: 381 ttccagaaga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no269_h13.g1 MSMg01no269_h13.g1 CHROMAT_FILE:
MSMg01no269_h13.g1 PHD_FILE: MSMg01no269_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:57 2005
         (245 letters)



>mm_chr1_95480806_95481450
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcttcagtttcagcatctttcccagtgactggttatttagaccacacccaggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actttcttcagtttcagcatctttcccagtgactggttatttagaccacacccaggctgg 386

                                                                       
Query: 61  agacactggctaacaccaggaggtgaacaaaaagaaaggctcaatgttcattctgggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacactggctaacaccaggaggtgaacaaaaagaaaggctcaatgttcattctgggctc 326

                                                                       
Query: 121 agtggctttgggccaactgtaccgttttctaaagctcacgaacagtgaagagaggtgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtggctttgggccaactgtaccgttttctaaagctcacgaacagtgaagagaggtgtag 266

                                                                       
Query: 181 cttgtgacaggacatggcagcctttggttctcagcccaagcacctgcacacaacaaccta 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 265 cttgtgacaggacatggcagcctttggttctcagcccaagcgcctgcacactacaaccta 206

                
Query: 241 ccagg 245
           |||||
Sbjct: 205 ccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)