BAC Information

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BAC

Clone NameMSMg01-269I20
Chromosome1 (Build37)
Map Location 80,677,414 - 80,677,702
singlet/doubletsinglet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269I20.T7 (MSMg01no269_i20.b1)MSMg01-269I20.TJ (MSMg01no269_i20.g1)
ACCAG409637AG409638
length737739
length of high quality
(start - end)
318 (42 - 359)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no269_i20.b1 PHD_FILE: MSMg01no269_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:02 2005CHROMAT_FILE: MSMg01no269_i20.g1 PHD_FILE: MSMg01no269_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGTGAAGGAACAGTGGAGCACCGTACTGGCTTGCTCCCATGCTTTCT
CAGCATACCTTCTTGTAGAACCCACACCAACTATCAATCAAGAAAATGCC
CTATAGAATTGCCTGCAGGCCAATCCTCTGATGGCATTTCCTCAATTAAT
ATTTTTCAATTCCAGATAATTTTTGTTTGTGTCAAATTAACATAAAAACG
AGCCAGCACACCATCTCTTCAAAATGTCTACAATCTGGACTTGAGAAATT
GCTCAGTGGTTAATAGCACTTACTGCTCTTCCAGAGGACTAGAGTTTGTT
TCCTAGCACCTGTGTCACAATTAACTCTCACTTCAGCTACAGGGGATTCA
ACACTCTCTTCTGGTCTCTCCAGTCACCTACACACACACACACACACACA
CACACACACACACACACGGAAGAAATGGAATGGAAAATTATGCAATAGTC
TTTTAAAAGACATTTAAATAATAATAAATATTTGTATTCTAAATTCTGTT
TATGAACCTTAGACTCTATCTATACTGCCAGATTGTGGTTTACATTCTCA
GTTCATTTCCCTCCTTTCTTTGAATAGTCCACCTTTAAACTTCATGGTTT
TCTATATTATGTTATATTCTTATCCTGTCTGTACAGGTTTATAANAGATT
ACAGAAAGGAGATCTTCTACTTTCTCACAAATAAATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATATACATATGAGCCACACTGAATAGATT
CACAAGGCTGTCTTTATTTTCATGCATATGTATATACATCACAGCAAAAA
TCATAGAAAAAGAATCCATGGATTTGAGAGGGGTCGAGGGGGTTGAAAGT
AGGGAAGGTAAAAGGGAAATGATGCAATCATATCTTAATTAAAAATAAAG
TAATAAGCCAGGGGGTGGTGCACGCCTTTAATCCCAGTGTCGAGAAGGCA
GAGGTAGGAAGATAGCTATGAGTTTCATGCCAGCCGGATTTAGAAGTGAG
TTTTAGGACATTTTTTTCTACACCCCACCCCGCCTGTCTTGATAAACAAA
CAAACAAATGTTAAAAATAAAAGCAAAGTGAAAGGTTTGCTTATGCTTCA
CTTCCATTTTCTAGAAATTATCTTTTTTCATTTTCCCCTTCTATTGGAAA
TAGATTCTTTGCTCATATAATACACCCTGATTATGAGTCCCCCTCCCTCT
ACTCCTCCCAGTTCCTCCCCTCTGGATCCACTTGCTTTCTATCCTCATTA
GAAAAGAATAGGCTTCTAAGGACCTAATGAAGCATGAAAAAAATAAATTT
AATGTGAAGAGACAAAACCAGTTGTATGGAAGTTGTACATGGCAACCCTA
CTGAAGGAAAAGAGTCCCAGGAGCAGACTCAAGAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_i20.g1 MSMg01no269_i20.g1 CHROMAT_FILE:
MSMg01no269_i20.g1 PHD_FILE: MSMg01no269_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:02 2005
         (289 letters)



>mm_chr1_80677214_80677902
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacatatgagccacactgaatagattcacaaggctgtctttattttcatgcatatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atatacatatgagccacactgaatagattcacaaggctgtctttatttttatgcatatgt 260

                                                                       
Query: 61  atatacatcacagcaaaaatcatagaaaaagaatccatggatttgagaggggtcgagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatacatcacagcaaaaatcatagaaaaagaatccatggatttgagaggggtcgagggg 320

                                                                       
Query: 121 gttgaaagtagggaaggtaaaagggaaatgatgcaatcatatcttaattaaaaataaagt 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| 
Sbjct: 321 gttgaaagtagggaaggtaaaggggaaatgatgcaatcatattttaattaaaaataaaga 380

                                                                       
Query: 181 aataagccagggggtggtgcacgcctttaatcccagtgtcgagaaggcagaggtaggaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aataagccagggggtggtgcacgcctttaatcccagtgtcgagaaggcagagttaggaag 440

                                                            
Query: 241 atagctatgagtttcatgccagccggatttagaagtgagttttaggaca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagctatgagtttcatgccagccggatttagaagtgagttttaggaca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)