ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTATGTTTTATTACCACATGGTAAAGTGCAGCATTGCGAAGT
TGTAGGGAACACAAGGTCCCTATAGAATATGCCCCCTGCCCCAACTCACT
GCTGCAGCCCAAAGGCATCTGTGAGGATGGGGAAGCCAAAAACCAGCCCA
GTTGGCGACCTTGGTCAGGTTGGGTGGCACTTGAGAAAGGCACAGGTTGG
TTTCTACAGATTTATTGATACATCACCTTCATCCCTGGAGCACTGAGACC
ATGTGCATTGAATCACGATATCCATCTTCTCTCTTCAATACATGGATGGA
AGGGACCAAAGATCCTCAGCCAGAACAATACAGGAAGAAGGGCAGGTAGG
AATGCAGAAGTGCTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGTTACATAACACCGTTC
TCTTG

CTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCCACCCATTATTGAAGC
TCAAGTAAGACATGCCCCAGAGTGCCCTGATATGCAAAGAAACAAGAGCC
ACTCTGGGGTTTCCAAAGACCTCCCGCGGGAAGACTATTGTCTGTTCCTG
AAAGACAGACGTGGCATTAGAGGGTATGAATGAAGAATGTCCACATCAGA
CTTGTGTTCAGGAAGGACTGATCTGGATGTTAGATAAGGTTTAAGTCACC
ACCTCCAGCAAGTGCTGGGAACTGTCACGTACTGTCCTCCTCTGCGTCCC
ATCCCTGGCTAGTCTTNCTCCCTATACCGCTCCCTGTTACCAATTAAGCT
TTAGCTTGTCTTGAAGTTCATCCTTAGGTCACCAGAGCTGGGACCTGGCT
GTACAAACTCCTCTTCTAGCTCTTGACAGCACCCGATGCCTGTTGTGACA
CAGTGGCATCTTGTAGATTGCAGGAAATGAGATGGGGGGTCAGAGAAGGG
AAATAAGACTGGTGTGGCCCTGGGCTTGACTGCTGAGGAGGAGAAAACCT
GCCCTCTGAGAGGAGGTTATGGCCACCTCTGGAATACACTTCCCACTGAG
ATCAGTGTAGTTTTCATGTCTAATTGTGGACACACACACTTTTTTTTTAA
TAGATAA

Query= MSMg01no269_j17.b1 MSMg01no269_j17.b1 CHROMAT_FILE:
MSMg01no269_j17.b1 PHD_FILE: MSMg01no269_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:06 2005
         (316 letters)



>mm_chr1_92077313_92078028
          Length = 716

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatgttttattaccacatggtaaagtgcagcattgcgaagttgtagggaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctctatgttttattaccacatggtaaagtgcagcattgcgaagttgtagggaaca 457

                                                                       
Query: 65  caaggtccctatagaatatgccccctgccccaactcactgctgcagcccaaaggcatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caaggtccctatagaatatgccccctgccccaactcactgctgcagcccaaaggcatctg 397

                                                                       
Query: 125 tgaggatggggaagccaaaaaccagcccagttggcgaccttggtcaggttgggtggcact 184
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 396 tgaggatggggaagctaaaaaccagcccagttggcgaccttggtcaggttgggtggcatt 337

                                                                       
Query: 185 tgagaaaggcacaggttggtttctacagatttattgatacatcaccttcatccctggagc 244
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 336 tgagagaggcacaggttggtttctacagatttattgatacttcaccttcatccctggagt 277

                                                                       
Query: 245 actgagaccatgtgcattgaatcacgatatccatcttctctcttcaatacatggatggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 actgagaccatgtgcattgaatcacgatatccatcttctctcttcaatacacggatggaa 217

                       
Query: 305 gggaccaaagat 316
           ||||||||||||
Sbjct: 216 gggaccaaagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_j17.g1 MSMg01no269_j17.g1 CHROMAT_FILE:
MSMg01no269_j17.g1 PHD_FILE: MSMg01no269_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:06 2005
         (287 letters)



>mm_chr1_91975380_91976066
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   acccacccattattgaagctcaagtaagacatgccccagagtgccctgatatgcaaagaa 63
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 acccacccattattgaagctcaagtaagatatgccccagagtgccctgatatgcaaagaa 263

                                                                       
Query: 64  acaagagccactctggggtttccaaagacctcccgcgggaagactattgtctgttcctga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaagagccactctggggtttccaaagacctcccgcgggaagactattgtctgttcctga 323

                                                                       
Query: 124 aagacagacgtggcattagagggtatgaatgaagaatgtccacatcagacttgtgttcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagacagacgtggcattagagggtatgaatgaagaatgtccacatcagacttgtgttcag 383

                                                                       
Query: 184 gaaggactgatctggatgttagataaggtttaagtcaccacctccagcaagtgctgggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaggactgatctggatgttagataaggtttaagtcaccacctccagcaagtgctgggaa 443

                                                      
Query: 244 ctgtcacgtactgtcctcctctgcgtcccatccctggctagtc 286
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtcacgtactgtcctcctctgcgtcccatccctggctagtc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)