Query= MSMg01no270_c09.b1 MSMg01no270_c09.b1 CHROMAT_FILE:
MSMg01no270_c09.b1 PHD_FILE: MSMg01no270_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:44 2005
(323 letters)
>mm_chr1_178629272_178629994
Length = 723
Score = 578 bits (299), Expect = e-169
Identities = 314/319 (98%)
Strand = Plus / Minus
Query: 5 gaattctttctacctttgtcctctgtgcaggacactgcaggaggctaatcttgatttaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaattctttctacctttgtcctctgtgcaggacactgcaggaggctaatcttgatttaat 277
Query: 65 acctccctcaggtgcccttgcttttttatcctggttgatatgggtcaatgggagacctct 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 276 acctccctcaggtgcccttgcttttttatcctggttgatatgggtcagtgggagacctct 217
Query: 125 atagaagctttgggggggcagggaggaaagatggagaaaggcagggagggagggagagag 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atagaagctttggggggccagggaggaaagatggagaaaggcagggagggagggagagag 157
Query: 185 aacagaaaaaaagagacagacagacaggcacacatacagagagagagacagagaggataa 244
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 156 aacagaaaaaaagaggcagacagacagacacacatacagagagagagacagagaggataa 97
Query: 245 actagccaaggagctattccacagagctgtccctagtacccgcttcttgttacttcccta 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 96 actagccaaggagctattccacagagctgtccctagtacctgcttcttgttacttcccta 37
Query: 305 gctctgtaatagacctgta 323
|||||||||||||||||||
Sbjct: 36 gctctgtaatagacctgta 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_c09.g1 MSMg01no270_c09.g1 CHROMAT_FILE:
MSMg01no270_c09.g1 PHD_FILE: MSMg01no270_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:44 2005
(657 letters)
>mm_chr1_178517283_178518339
Length = 1057
Score = 1035 bits (535), Expect = 0.0
Identities = 586/619 (94%), Gaps = 28/619 (4%)
Strand = Plus / Plus
Query: 1 cagtgacctgtacagtaagtctgtttggagggcttctaccaacttcacttggagttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagtgacctgtacagtaagtctgtttggagggcttctaccaacttcacttggagttctct 288
Query: 61 tccacccccactatgttaacagtctttgctagggttgccggaccagaccctaacccactg 120
|||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 289 tccacccccactatgttaacagtctttgctagggtt-cctg----------------ctg 331
Query: 121 cagaccaccttcctgttctggccatcacccagtgtgatgtagactgtgcacaaacacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagaccaccttcctgttctggccatcacccagtgtgatgtagactgtgcacaaacacaaa 391
Query: 181 aagatctggcaagcatcaaccacttctaaacagggggttataagattcaaggcatttgcc 240
||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aag----g-------tcaaccacttctaaacagggggttataagattcaaggcatttgcc 440
Query: 241 tcttggcattccatgtatagtagccagcattctccagagaaatataattaattgtgttca 300
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 441 tcttggcattcaatgtatagtagtcagcattctccagagaaatagaattaattgtgttca 500
Query: 301 atacaagaaaaactttactagattggtccacctagtcacagaggctgaaaagtcgcacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 atacaagaaaaactttactagattggtccacctagtcacagaggctgaaaagtagcacaa 560
Query: 361 tactcacaaagaggacagagagccaggacatgaagctttgtggtgaaagaaaccaacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactcacaaagaggacagagagccaggacatgaagctttgtggtgaaagaaaccaacatt 620
Query: 421 gctgtcctaatccacgactaaagtccagaacaagcctccattcaaacactgaagaaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtcctaatccacgactaaagtccagaacaagcctccattcaaacactgaagaaggga 680
Query: 481 tagcaagatggctgagcaggtaaaagcatttcactaagcctgctgagctaaactgtaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcaagatggctgagcaggtaaaagcatttcactaagcctgctgagctaaactgtaacc 740
Query: 541 ccaggacccacatagtagaaggagagaactgacttctgtaggttgtcttcatgtgctgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaggacccacatagtagaaggagagaactgacttctgtaggttgtcttcatgtgctgag 800
Query: 601 acatgtgcacacacacaca 619
|||||||||||||||||||
Sbjct: 801 acatgtgcacacacacaca 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
