Query= MSMg01no270_n19.b1 MSMg01no270_n19.b1 CHROMAT_FILE:
MSMg01no270_n19.b1 PHD_FILE: MSMg01no270_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:37 2005
(323 letters)
>mm_chr1_70436699_70437423
Length = 725
Score = 584 bits (302), Expect = e-171
Identities = 315/320 (98%), Gaps = 2/320 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagttaagactacacaaggtacagccaacctgtcatcactgaagttttaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcaaagttaagactacacaaggtacagccaacctgtcatcactgaagttttaatag 465
Query: 65 gccaaatgtgcaaaagaataaatgacagtgacaagattattcataagggatttct--atg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 gccaaatgtgcaaaagaataaatgacagtgacaagattattcataagggatttctacatg 405
Query: 123 ttgaactgaaattaagaagctacaagcaggaaggtaggtcaaatcaacattatacagctg 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgaactgaaattaagaagctacaggcaggaaggtaggtcaaatcaacattatacagctg 345
Query: 183 tggaattacaaattactgcaatgagttacagtcactgagttcctcaatggaacagcaaca 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 tggaattacaaattactgcaatgagttacagtcactgagttcctcaatgggacagcaaca 285
Query: 243 gaccaaacacttggctaaatgatctgttataaaatcattcaatgtcattaagctccattc 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaccaaacacttggctaaatgatctgttataaaatcattcaatgtcattaagctccattc 225
Query: 303 aacctgtcctctaaaaggca 322
||||||||||||||||||||
Sbjct: 224 aacctgtcctctaaaaggca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 725
Length adjustment: 9
Effective length of query: 314
Effective length of database: 716
Effective search space: 224824
Effective search space used: 224824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n19.g1 MSMg01no270_n19.g1 CHROMAT_FILE:
MSMg01no270_n19.g1 PHD_FILE: MSMg01no270_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:37 2005
(492 letters)
>mm_chr1_70293256_70294147
Length = 892
Score = 837 bits (433), Expect = 0.0
Identities = 486/521 (93%), Gaps = 29/521 (5%)
Strand = Plus / Plus
Query: 1 ttggagtgggaaaggtcatctaccctagcacattaattgcttatccagccccaagtggta 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttggagtgggaaaggtcatctaccctagcacattaattgcttatccagttccaagtggta 260
Query: 61 agccctaaaagcataaatacaaggaacatcacactgactgaaactgggcatgctactctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccctaaaagcataaatacaaggaacatcacactgactgaaactgggcatgctactctt 320
Query: 121 tagaaatatatatgtatattcataaatatttagaaatatatatacgtcctataaacattt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tagaaatatatatgtatattcataaatatttagaaatatatatacatcctataaacattt 380
Query: 181 gtctttataaccactgataaagagtcttcacactttaatttttgcaacaaatagagacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctttataaccactgataaagagtcttcacactttaatttttgcaacaaatagagacca 440
Query: 241 ctacagaaaacctatatgtgtatatgtgtgt-tgtt----------------atatatat 283
||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 441 ctacagaaaacctatatgtgtatatgtgtgtgtgttgtgtatatatatatatatatatat 500
Query: 284 atatacctgtttctgcctgtctgtctctttctgtctgtctgtttctctctctgttgctct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatacctgtttctgcctgtctgtctctttctgtctgtctgtttctctctctgttgctct 560
Query: 344 ctcactgtgtgtgtgtatgtgcgtgtgtgtgtgtgtgtgtgtgtgtg------------g 391
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ctcactgtgtgtgtgtatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg 620
Query: 392 tatgtatgtgtctttgtggtgtttcctaaaactccatgtatagtccatcctgaggataaa 451
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tatgtttgtgtctttgtggtatttcctagaactccatgtatagtccatcctgaggataaa 680
Query: 452 tttttcataccatttctgcaggttatagttctatgcctgtg 492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttcataccatttctgcaggttatagttctatgcctgtg 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
