XXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCTTA
TCTTTGCAAACAAACTAGCATTTAGGACGGTGTCTCTTTTAGATATTGGA
GGCTACACTATTGCCCACAGGAATTGGCAGCCAAAAAATTTGTAGCATGG
ACAGCCAAAAACTGGAGAGACTGGATTGCTTGTTGGATTTTGAACTTTGC
TTTTCAAAGTTATGGTTATGCTCTAATATGTCAAACTAAACTTAAAAATT
ATAGTTTAACTGCAGTATTTCATTGGCTGCAGTTTCCAGTTTGATCACAT
GTTCAGGATTCTAACTCACACATATTTGTAATTAAGAAAAAAATCAAGCA
TGTATAGATGATTAAGAAAGTAATAAAAGTTAAAAACAGCGGTTAAAAAG
TATGGGCCTACTGCCCCTTTTATTCAAACTGTATTGGAAATAGTGGTAGA
AGCAAAATTTAATGCACCAAGTTTGAAAAGGAGATCTCAGTGGAAATTTA
TCTAGCAGGGTCCTGAGGAACTGCTAAAAGCAGCCAGTAGAATATTTGGA
GACTTTGGCAGGAGTTCTTTTATCACATAATTGTCTTATGAGTAGTACTC
TACAAAGCATAGGCAGACTTATCTGGATACATTCTTACTGTACAGAAATT
GGATCCTCATACAATTAGGGTCTGGCTATGGCTGCTGCCTTTCAGGTGAA
AACAATAAATGCAATGCTTTCACAGCACCAATGTGATAAGGAAAGTTTTA
AGTATGGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTACACTTGGGCATTGAGCCTTCACAGGA
CCAAGGGATTTCCCTCCCACTGATGCCAGATATTGCCATCCTCTGCTACA
TATGCAGCTGGAGCCATGGGTCCACTTTGATTGGTGATTTAGTCCCTGGG
AGCTCTGGGGACAGGGAGAGGTCTGGTTGGTTGATATTGTTGTTTTTCCT
ATTGAGTTGGAAACCCCTTAAGCTCCTCCAGTCCTTGTTCTACCTTCTTC
ACTGGAGTCACCATTCTCAGTCTGATGGTTGGATGCAAGTATCCACATCT
GTATTGGTCATATTCTGGCTGAGCTTCTTAAGAGACAGCTATATCAGGCT
CCTGTCAGCAAGCACTTATTGGAATCAACAATAGTGTCTGGGTTTGGTGT
TTGCATATGAGATTTGATCCCCAGGTGAGGCAGTCTCTGTATGACCTTTC
CTTCAGTCTCTGCTCCACACTTTTTCTCTGTACTTCTTTAGGCAGGAGCA
ATTCTGGGTTAAAATTTTGGAGATGAGTGGGTGGCCCCATGCCTCAACTG
GGGCCTTGCCTAACTTCTGGTTATGGTCTCTACAGGTTCTCCCTTCCCTT
TGTTGGGTATTTCAGCTAATGTCATCATCACCTTTGTGTCCTAGGTGCCT
CTTGCTTTCCTGGTATCTGGAACGTTCTGGTGGCTACCCCCA

Query= MSMg01no271_c19.b1 MSMg01no271_c19.b1 CHROMAT_FILE:
MSMg01no271_c19.b1 PHD_FILE: MSMg01no271_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:00 2005
         (692 letters)



>mm_chr1_114541797_114542887
          Length = 1091

 Score = 1065 bits (551), Expect = 0.0
 Identities = 668/731 (91%), Gaps = 41/731 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagcatttaggacggtgtctcttttagatattggaggctacactattgcccacaggaa 60
           ||||| |||||||| |||||||||||||||||||| ||||||||||||||  ||||||||
Sbjct: 163 actaggatttaggatggtgtctcttttagatattgtaggctacactattgtgcacaggaa 222

                                                                       
Query: 61  ttggcagcc--aaaaaatttgtagcatggacagccaaaaac------------------- 99
           |||||||||  |||||||||||||||||| |||||||||||                   
Sbjct: 223 ttggcagccaaaaaaaatttgtagcatgggcagccaaaaactttgtagcatgggggtgat 282

                                                                       
Query: 100 -----------------tggagagactggattgcttgttggattttgaactttgcttttc 142
                            |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 gaacttggagatgattttggagagactagattgcttgttggattttgaactttgcttttc 342

                                                                       
Query: 143 aaagttatggttatgctctaatatgtcaaactaaacttaaaaattatagtttaactg-ca 201
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 343 aaagttatggctatgctctaatatgtcaaactaaacttaaaaattatagtttaactgcca 402

                                                                       
Query: 202 gtatttcattggctgcagtttccagtttgatcacatgttcaggattctaactcacacata 261
           || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 403 gtgtttcattggctgcagtttccagtttgatcacaggttcaggattctaactcatacata 462

                                                                       
Query: 262 tttgtaattaagaaaaaaatcaagcatgtatagatgattaagaaagtaataaaagttaaa 321
           |||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||
Sbjct: 463 tttgtaattaag-aaaaaatcaagcatgtcgagatgattaagaaagtaataaaa-ttaaa 520

                                                                       
Query: 322 aacagcggttaaaaagtatgggcctactgccccttttattcaaactgtattggaaatagt 381
           ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 aacagtggtgaaaaagtatgggcctactgccccttttactcaaactgtattggaaatagt 580

                                                                       
Query: 382 ggtagaagcaaaatttaatgcaccaagtttgaaaaggagatctcagtggaaatttatcta 441
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 581 ggtagaagcaaaatttagtgcaccaagtttgaaaaggagatctcagtggaagtttatcta 640

                                                                       
Query: 442 gcagggtcctgaggaactgctaaaagcagccagtagaatatttggagactttggcaggag 501
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 641 tcagggtcctgaggaactgctaaaagcagccggtagaatatttggagactttggcaggag 700

                                                                       
Query: 502 ttcttttatcacataattgtcttatgagtagtactctacaaagcataggcagacttatct 561
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 701 ttcttttatcacataattgtcttatgagtaatactctacaaagcataggcagacttatct 760

                                                                       
Query: 562 ggatacattcttactgtacagaaattggatcctcatacaattagggtctggctatggctg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ggatacattcttactgtacagaaattggatcctcatacaattagggtctggctatggctg 820

                                                                       
Query: 622 ctgcctttcaggtgaaaacaataaatgcaatgctttcacagcaccaatgtgataaggaaa 681
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctgccttgcaggtgaaaacaataaatgcaatgctttcacagcaccaatgtgataaggaaa 880

                      
Query: 682 gttttaagtat 692
           |||||||||||
Sbjct: 881 gttttaagtat 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space:   737242
Effective search space used:   737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)