BAC Information

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BAC

Clone NameMSMg01-272F01
Chromosome1 (Build37)
Map Location 33,988,485 - 33,988,768
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneDst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F01.T7 (MSMg01no272_f01.b1)MSMg01-272F01.TJ (MSMg01no272_f01.g1)
ACCAG411634AG411635
length753733
length of high quality
(start - end)
320 (45 - 364)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no272_f01.b1 PHD_FILE: MSMg01no272_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:26 2005CHROMAT_FILE: MSMg01no272_f01.g1 PHD_FILE: MSMg01no272_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTACATTGCCTTTCTAGGGAATTTTGTTAGAGCAACAAAAAGGT
GACTAGTGTGAAATGTACACACCCACACACATACGCATGCATGCACAGAG
GGAGAGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGTGAGAGAGAGTCAGTCTAAAATGTGTCTTTTCAGCTTTAAAAGAAG
GAAGGGCTGAAGAGATGGCTCAGTGGTTTAGAGCACTGGCTTCTCTAAAG
TCAAGCTCTGACTCCAGAGGTCCTGAGTTCAATTTCCAGCTACCAAATGG
TGTCTCACAACCATCTGTTATGGGACCCGACCCCCTCTTCTGGTGTGTCT
GAAGACAGCTACAATGTACTCATATACTCAAATACATAAAATAAATAAAT
CTTAAAAAATAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGAT
GTTTAAGATTATTTTCCGTAGTATTTTGTGTAGTTCTTGCTATGAGGTAC
TGTCTCCTCGTATTCATTCACTACCGCCCTAGTTCTTTTTCTCTTCATTT
TCCCCTCTCTCTTTCCTGTTCCTCTCGCTTTTCCTTTTTCCCTTTTTTTA
TATTTTTTATCCCATCCGTATCCAATCGTCACTTCCCTCTCTCTTTCCTT
TCCCTATCCCAGCCTTCCGACTTTATTCTCTTACCATCTATTTCATCCCT
ATN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGGGCTGCAGAAAGTGTCTTAAGC
CAGGTTTCTTACCCTTTCTATCCTTCCTTCTCCATACCCAGTGAAGGGAG
AGCCTGCAAGACCTGAGGCGGATCTTAACCTAGGTCAGGTCCTTAGCTTA
CCTTGGGCAAACCACTTAATTGGTATTGCTCTCTTCTGAGAAACTAGAAA
TTACAACATTGTTCCTCATAGGCCCCTTTGAGTATCCACGAGACAATAAA
TGTCTTTTCTCCCCTTCCCTACCACGTATCAAGCTGATACAGGCATCTGT
AGCATAATAGTTTATTATTTCCGCCCCCCTCCCATTCATCAGTGAATAAT
TCAGATCCAGCAGGCTCACGCCATCTCACATTCCTGAGCTCCTGTCTACC
CTCCTTGTCTGGCTGGAAACACAGTACTTCTACACCTCATACACTTCAGC
ATTGCTCCATCTCATACAGAGAAGGCACAGGCGAGGGTTGCATCCTTTCC
TACAGAATACAAAGACGTCAAGTGATTTATGCAATGTCACAATTGGAAAA
TATTAGTGACCGAGTGTTTTTAATGTTAGTTTTCAAAGAGCCCTTGGTTG
AGTAGAGACAGGTTTCAGTGGTTTCTGAAGATGTTGAGAATCGGTCTTGC
CCTAATCCTGTCCTAGGATGGTCTATTTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f01.g1 MSMg01no272_f01.g1 CHROMAT_FILE:
MSMg01no272_f01.g1 PHD_FILE: MSMg01no272_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:26 2005
         (285 letters)



>mm_chr1_33988285_33988968
          Length = 684

 Score =  474 bits (245), Expect = e-138
 Identities = 275/285 (96%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggggctgcagaaagtgtcttaagccaggtttcttaccctttctatccttccttctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catggggctgcagaaagtgtcttaagccaggtttcttaccctttctatgcttccttctcc 260

                                                                       
Query: 61  atacccagtgaagggagagcctgcaagacctgaggcggatcttaacctaggtcaggtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacccagtgaagggagagcctgcaagacctgaggcggatcttaacctaggtcaggtcct 320

                                                                       
Query: 121 tagcttaccttgggcaaaccacttaattggtattgctctcttctgagaaactagaaatta 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcttaccttgggcaaaccccttaattggtattgctctcttctgagaaactagaaatta 380

                                                                       
Query: 181 caacattgttcctcataggcccctttgagtatccacgagacaataaatgtcttttctccc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 caacattgttcctcataggcccctttgagtatccaggagacaataaatgtcttttctccc 440

                                                        
Query: 241 cttccctaccacgtatcaagctgatacaggcatctgtagcataat 285
            |||||  || |||||||||||| |||||||| | ||||||||||
Sbjct: 441 -ttcccgcccgcgtatcaagctggtacaggcacccgtagcataat 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)