Query= MSMg01no272_k15.b1 MSMg01no272_k15.b1 CHROMAT_FILE:
MSMg01no272_k15.b1 PHD_FILE: MSMg01no272_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:52 2005
(526 letters)
>mm_chr1_70201974_70202899
Length = 926
Score = 971 bits (502), Expect = 0.0
Identities = 520/526 (98%)
Strand = Plus / Minus
Query: 1 catcacaggcaaggctgtgggggagcagggactacacagattttcccagaacagagccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 catcacaggcaaggctgtgggggagcagggactacacagattttcccagaacagagccag 667
Query: 61 agtgctaaaatctgaactgttcttacatcagaaaatattttaaatacatacagtatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agtgctaaaatctgaactgttcttacatcagaaaatattttaaatacatacagtatatct 607
Query: 121 gttcaagtgtctgctatgaattatagaatctaatcattattctatgatataatcttacag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtccaagtgtctgctatgaattatagaatctaatcattattctatgatataatcttacag 547
Query: 181 ttttaacacaaaaataaattttgtcatttctactttcaatatataagtctgacttaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttttaacacaaaaataaattttgtcatttctactttcaatatataagtctgacttaaatt 487
Query: 241 tacttgtcagatatttatatctacgaatactttttctgtctgtctgtccgcccactatct 300
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 486 tacttgtcagatatttatatctacgaatactttttctgtctgtctgtctgtctactatct 427
Query: 301 cctatgaatccttctcatttccattagctagctggaggaaacaccagtttacaacattct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 cctatgaatccttctcatttccattagctagctggaggaaacaccagtttacaacatttt 367
Query: 361 ttctaatctccctatcttctgattttgaattcttctaagccatttcgacatagaagtcag 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttctaatctccctatcttctaattttgaattcttctaagccatttcgacatagaagtcag 307
Query: 421 tgtcatcacacttcagagcaacttctattagagggacaaatcattttaaagctcctcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgtcatcacacttcagagcaacttctattagagggacaaatcattttaaagctcctcaat 247
Query: 481 aaatctgacagccagttccagcaatcagtatcctgaacaagggatt 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaatctgacagccagttccagcaatcagtatcctgaacaagggatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_k15.g1 MSMg01no272_k15.g1 CHROMAT_FILE:
MSMg01no272_k15.g1 PHD_FILE: MSMg01no272_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:52 2005
(594 letters)
>mm_chr1_70069724_70070714
Length = 991
Score = 1133 bits (586), Expect = 0.0
Identities = 591/594 (99%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 1 acacaaagggagaagagcatagttttaacaaataagccagactgtaaatgtgttggataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaaagggagaagagcatagttttaacaaataagccagactgtaaatgtgttggataa 260
Query: 61 gagaaatgagacagagacgaggagtgcttaaaaagaaggagacactatcactttttaagt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gagaaatgagacagagacgaggagtgcttaaaaag---gagacactatcactttttaagt 317
Query: 121 aaaatttgcatgagaacattattctgtgtgcttaatttgaaaagccctgaatctatcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaatttgcatgagaacattattctgtgtgcttaatttgaaaagccctgaatctatcaga 377
Query: 181 ccagctatggagtctgcgccgtgtatgattactaaagatactgatataagattgatagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccagctatggagtctgcgccgtgtatgattactaaagatactgatataagattgatagct 437
Query: 241 ctaggttaaatttacctactatgaagtaaaatttaatgtactagttatgtgtattaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctaggttaaatttacctactatgaagtaaaatttaatgtactagttatgtgtattaatta 497
Query: 301 gtttcttattgctatgattaaaaagcccactggcatgagtccttgacactagggaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtttcttattgctatgattaaaaagcccactggcatgagtccttgacactagggaatttt 557
Query: 361 ggcagtaggcagtaatcatggtggcaggaaatagttgagacatcacatgataaactatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggcagtaggcagtaatcatggtggcaggaaatagttgagacatcacatgataaactatag 617
Query: 421 cgggaaggagagggagaaaacttgaaacgacacacatgttttcttccagtgacatacttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgggaaggagagggagaaaacttgaaacgacacacatgttttcttccagtgacatacttc 677
Query: 481 tttcaacaaggccatacttctcacatagtgccatcattgggactaagtgttcagtgtcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttcaacaaggccatacttctcacatagtgccatcattgggactaagtgttcagtgtcag 737
Query: 541 aaacaatggggaattcaaagcacacatcatgaaaattctaatggagggaaactt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaacaatggggaattcaaagcacacatcatgaaaattctaatggagggaaactt 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 991
Length adjustment: 10
Effective length of query: 584
Effective length of database: 981
Effective search space: 572904
Effective search space used: 572904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
