BAC Information

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BAC

Clone NameMSMg01-273C24
Chromosome1 (Build37)
Map Location 70,049,543 - 70,049,836
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273C24.T7 (MSMg01no273_c24.b1)MSMg01-273C24.TJ (MSMg01no273_c24.g1)
ACCAG412261AG412262
length746748
length of high quality
(start - end)
349 (376 - 724)294 (65 - 358)
definitionCHROMAT_FILE: MSMg01no273_c24.b1 PHD_FILE: MSMg01no273_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:30 2005CHROMAT_FILE: MSMg01no273_c24.g1 PHD_FILE: MSMg01no273_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTC
AGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCTAC
CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAACTGCATGGT
ACTCGCATAGCCACAGACAAGTAGACCAATGGAATAGAATTGAAGATCCA
GAGACGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAA
AACCATCCAGTGGAAAATAGACAGCATTTTCAACAAATGGTGCTGACACA
GCTGGCGGTTATTGTGTAGAAGAATGAGAATTGACCCATTCCTATCTCCT
TGTACTATTGTCACCTCTCCCCGCATTAAGGAACTCCACATAAAACCAGA
GACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGG
GTACAGGGGAAAAAATTCCTGAATGGAACAGCAATGGCTTGTGCTGTAAG
ATCGAGAATCAATAAATGGGACCTCATAAAGTTGTATAGCTTCTGCAAGG
CAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGAATGGGAAAGG
ATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCACACCCATTCT
TGCAGACTAACTTCTAATGTTTTCTTTTGATTTTAAAATAGAATACAAAT
TTCTAAAATATTTTCTGATGGAAATGCTAGAGTTTATTTCTTGATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAAATCAAAGAACTACCAGAATGACTGGGAGACTCC
CCCTATAGGGGATCTAAGGTACCAGACAAGGGTACTACCTCTGAGCTACA
TCTTCATGACTGGAATATTTAATAGTAGAATTTGTAGAGGGAGAGATAGA
GGAATCAAAGTTATCTGTGGGACTTTAGCTAATATATTTTTATACACTGT
GGTTCTTTTATAATGATGGGGATTAGGAGAAATACAGGCTTTCTGAGGTA
ACACAAATTTCTTCTTTGGATATGAGAGCTGGAGAATCCTACAAAATGTT
CACACTTAATGATTATACTCCCACGCCACCACTTGGAATTGATGGCCAGA
GAATAGAAGATAGCACCTGAGAAATGTACTTAGTAAAAAGATAAGACTAA
GAGCTGGTCTCTCGGGCAGTCCTTTAAGCAGACATCTGACCCAAGAGGAG
CAGTTCACTGGACAAGCTAAGAAGGAGGAACATGGAAGTCAAGAGGAAAT
CCAGGACACACTAACAGCAGATGGAGTCTCAGGAAGTAATACAGGAGCGG
CCAACTGTCTAAGCAGTACCTGACTGGTANAGAAAGTGAGAAGCTATGAG
TGGCCCAGACCACTGCTAGGTTATTAAAAACAAAAAACAAAAACTAAACA
AAAAACTAAACAAAACACCAGTGACTCTGATAAGGGGAGTTTCAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_c24.g1 MSMg01no273_c24.g1 CHROMAT_FILE:
MSMg01no273_c24.g1 PHD_FILE: MSMg01no273_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:31 2005
         (294 letters)



>mm_chr1_70049343_70050036
          Length = 694

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatcaaagaactaccagaatgactgggagactccccctataggggatctaaggtacca 60
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 494 taaatcaaagaactaccagaatgactggtagactccccttataggggatctaaggtacca 435

                                                                       
Query: 61  gacaagggtactacctctgagctacatcttcatgactggaatatttaatagtagaatttg 120
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 gacaagggtactacctccgagctacatcttcatgactggaacatttaatagtagaatttg 375

                                                                       
Query: 121 tagagggagagatagaggaatcaaagttatctgtgggactttagctaatatatttttata 180
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 374 tagagggagagatagaggaatcaaagttatttgtgggacttaagctaatatatttttata 315

                                                                       
Query: 181 cactgtggttcttttataatgatggggattaggagaaatacaggctttctgaggtaacac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cactgtgcttcttttataatgatggggattaggagaaatacaggctttctgaggtaacac 255

                                                                 
Query: 241 aaatttcttctttggatatgagagctggagaatcctacaaaatgttcacactta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaatttcttctttggatatgagagctggagaatcctacaaaatgttcacactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)