Query= MSMg01no273_o04.b1 MSMg01no273_o04.b1 CHROMAT_FILE:
MSMg01no273_o04.b1 PHD_FILE: MSMg01no273_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:20 2005
(315 letters)
>mm_chr1_80755170_80755888
Length = 719
Score = 532 bits (275), Expect = e-155
Identities = 299/315 (94%), Gaps = 14/315 (4%)
Strand = Plus / Minus
Query: 5 gaattcacacctactatcccaagaccaagtaaggaatctgggtcccctagagacttcaaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattcacaccgactatcccaagaccaagtaaggaatctgggtcccctagagacttcaaa 397
Query: 65 gtaaggggcccagccaccagagggatccttacttaataaaacctctgacccacctccaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtaaggggcccagccaccagagggatccttacttaataaaacctctgacccacctccaag 337
Query: 125 ggtgcacaggatacctaagatcaacccttctccacttcctaacctcagaatgtaggtctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggtgcacaggatacctaagatcaacccttctccacttcctaacctcagaatgtaggtctg 277
Query: 185 atcctcaaaaaaacgccaaatccccaaccctccatgagcatcgga----gaatagggcgg 240
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 276 atcctcaaaaaaacgccaaatccccaaccctctatgagcatcggattgagaatagggcgg 217
Query: 241 taagcaggtcccgctcggtgccagcagaggcagcccggcatcagtaccgagtcgcgggtg 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 216 taagcaggtccc----------agcagaggcagcccggcatcagtaccgagtcgcgggtg 167
Query: 301 ggcggcgcgggtgga 315
|||||||||||||||
Sbjct: 166 ggcggcgcgggtgga 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 719
Length adjustment: 9
Effective length of query: 306
Effective length of database: 710
Effective search space: 217260
Effective search space used: 217260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_o04.g1 MSMg01no273_o04.g1 CHROMAT_FILE:
MSMg01no273_o04.g1 PHD_FILE: MSMg01no273_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:20 2005
(288 letters)
>mm_chr1_80587898_80588585
Length = 688
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Plus
Query: 1 tcctcatcaaatacaggaaaaatatggatccattgttactacagtagtaggtaggatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcatcaaatacaggaaaaatatggatccattgttactacagtagtaggtaggatggt 260
Query: 61 taaagacaacagaggtgctaaggacagaaggtctcactgtctcctgcagcccactgtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagacaacagaggtgctaaggacagaaggtctcactgtctcctgcagcccactgtgcc 320
Query: 121 ccaactcatcaagttagttccactcaggaaggaggcatgggtggtgttggaaaaggccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaactcatcaagttagttccactcaggaaggaggcatgggtggtgttggaaaaggccaa 380
Query: 181 gcaagtgaacaacgcccctcctgccttctaagacatatacggcttgagtaccaaaatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaagtgaacaacgcccctcctgccttctaagacatatacggcttgagtaccaaaatcat 440
Query: 241 aaaaatcaagtttcttttctgagctgggagacagcagttgaaacttaa 288
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 aaaaatcaagtttcttttctgggctgggagacagcagttgaaacttaa 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
