BAC Information

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BAC

Clone NameMSMg01-274I22
Chromosome1 (Build37)
Map Location 79,014,946 - 79,015,314
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274I22.T7 (MSMg01no274_i22.b1)MSMg01-274I22.TJ (MSMg01no274_i22.g1)
ACCAG413250AG413251
length744745
length of high quality
(start - end)
313 (38 - 350)368 (378 - 745)
definitionCHROMAT_FILE: MSMg01no274_i22.b1 PHD_FILE: MSMg01no274_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:07 2005CHROMAT_FILE: MSMg01no274_i22.g1 PHD_FILE: MSMg01no274_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTATATATCGGATATTAGTCCCCTAACGCATTTAGGATTGGTAAAGATCT
TTTCTTAACATGTTGCCCCCTGTCTTGTCCTATTGACAGTGTCCTTTGAC
TTACAAAATTTATATTTTGCAATTTTATGAGGCCCAATTTCTCAGTTCTT
GATCCTAGAGCATAAAATATTGGTATTCTGTTCAGTAAAATTTCCCCTGT
GTTCGTGTCCTTGAGACTCTTCCTCACTTTCATCTCTATTAGTTTCAGTG
TATCTGGTTTTATGTGTTTGTTTTTGATCAACTTCAACTAGAGCTTTGTA
CTATGTAATAACTTCCGATCCATTACCCCAATTGAAGACCCAGAAATTAA
CTCACACACCTACGGTCAAAAAAACAAAAACAAAGGAGCTGGGAGCATCC
AGTTGATAAAAGACTGCCTTTTCAACAAATGGTGTTGGTTCAACTGGTAG
TTTTCATGTATGAGAATGAAAATTGATCCATTCTTATCTCCTTGTACAAA
TCTCTAGCCCAAGTGGATCAAAGAACTCTACATAAAACCAGAGACACTGA
ATCCTATATAGAATAAAGTCGTAAAGACCCTCTAACATATGGTTCTACGC
AGATTATTCCTGATCCGACCCCAATTGATTGTGCCGTCCCATCTTGAATT
CTCCCATGCCACCTATTATCACTCGCTAGTTCCTCTTGGCACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCTTTTTTTAAATAAACTAACAATAAAATA
ATGCTCAGTTCATCTAGACCCATCCCTTGCTTTGACTCAGTCCCATGATC
AGCTCACTTTTTATTTTTTAATATTTGTTCATGAAAAAGAAGACTACTTC
ACATAGTCTAATGTGAGACAATTTTGAGAATAAAAGAAAGTATGTGCTAA
AGTGGAAATTTGACATTTTTAAATATGTTTTAAAGCAAGATCTTACTACA
TAGGCCAGGATGCACTTGAACTCACAGATATCTACCAAATACTGCCTCCT
GAATACTGTTTTTATATATGCGCGCCTCATGCCTAGCTAATTTTTTCACT
TTTATGGACCACTATTAATTTTGTAATATTGACAATTAAAATAGCCAACT
CAAAATTACTTTAAAAATAAAATCCACTTAAATAAATTAAGAGAAAAAAT
TATGCAAATTCTACATCTCTTGTCTGATCACTTTTCTTCACACTTGTTTG
GTTTCTTAACATCAAGTCTGCGTGCTCCCATCTTTAGGTATATATTTTTT
GTTATAGCACTTGATTTTTTTTAAAAGAAGGTATTCTTTCAATATGTATC
CTTCTTTGATTTCTGTGGCTGTATAAAACACTCTGGTCAAAAGCAACTTA
GAGGAAAGATTGATTTCATCTTGCAATTCCCAGGCCATCTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_i22.g1 MSMg01no274_i22.g1 CHROMAT_FILE:
MSMg01no274_i22.g1 PHD_FILE: MSMg01no274_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:07 2005
         (368 letters)



>mm_chr1_79014746_79015514
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcctagctaattttttcacttttatggaccactattaattttgtaatattgacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcctagctaattttttcacttttatggaccactattaattttgtaatattgacaatt 260

                                                                       
Query: 61  aaaatagccaactcaaaattactttaaaaataaaatccacttaaataaattaagagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatagccaactcaaaattactttaaaaataaaatccacttaaataaattaagagaaaa 320

                                                                       
Query: 121 aattatgcaaattctacatctcttgtctgatcacttttcttcacacttgtttggtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatgcaaattctacatctcttgtctgatcacttttcttcacacttgtttggtttctt 380

                                                                       
Query: 181 aacatcaagtctgcgtgctcccatctttaggtatatattttttgttatagcacttgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcaagtctgcgtgctcccatctttaggtatatattttttgttatagcacttgattt 440

                                                                       
Query: 241 ttttt-aaaagaaggtattctttcaatatgtatccttctttgatttctgtggctgtataa 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttaaaagaaggtattctttcaatatgtatccttctttgatttctgtggctgtataa 500

                                                                       
Query: 300 aacactctggtcaaaagcaacttagaggaaagattgatttcatcttgcaattcccaggcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacactctggtcaaaagcaacttagaggaaagattgatttcatcttgcaattcccaggcc 560

                    
Query: 360 atctctcaa 368
           |||||||||
Sbjct: 561 atctctcaa 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space:   272840
Effective search space used:   272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)