BAC Information

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BAC

Clone NameMSMg01-274K10
Chromosome1 (Build37)
Map Location 67,488,110 - 67,488,470
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K10.T7 (MSMg01no274_k10.b1)MSMg01-274K10.TJ (MSMg01no274_k10.g1)
ACCAG413320AG413321
length738738
length of high quality
(start - end)
380 (359 - 738)361 (375 - 735)
definitionCHROMAT_FILE: MSMg01no274_k10.b1 PHD_FILE: MSMg01no274_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:14 2005CHROMAT_FILE: MSMg01no274_k10.g1 PHD_FILE: MSMg01no274_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAATTGACGAATCTTAAATGGCTGAGAAACACCTAAAATGTTTAAAGTC
CCTAGTGATCAGAGCAATGCAAATCAAAATGACCCTGATATTCCATCTTA
TACCAGTCAGAGTGGCTAACATCAAAACCTCAGGCTACAGTATATGTTGG
CAAGGATGTGGAGAAAGAGGAACACTCCATTGCAGGTGGAATTGAAAACT
GGTATAACGACTCTGGAAATCAATCTGGAGGTTCCTCAGAAAATTGGAAA
TAGTACTACCTGAAGACCCAGCAATACCACTCTTGGGAATTTACCCAAAA
GATGTTCCACCATGCTACCGGGGCAAGTGTTCCACTATGTTCATAGTGGT
CTTGTTTGTGATAACCAGAAGCTGGAAACAACCCAGATGTCCCACAACAG
AAGAATGGATACAGAAAATGTTTTTCATTTACACAGTGGGATACTACTCA
GCTATTAAGAATGAGGACATTCTGAGTTTTGCAGGCAAATGGATGGAAAT
AGAAAATATCATCTTGAGTGAAATAAGTCAGACCCAAAAGGACATGCATG
GTATGTACTCACTAATAAGTGGATATCAGCCCCCCCCCCCAAAAGTGTCC
AATACGCAAGGTACAGCCCATAGAACTCAAAAAGCTGAAGGCCCAAGGTG
AGGATGCCTCGGTCCCACTTGGGAGGGAGAAGAAAGCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTTGTTT
ACTAGTTAGGGCACAGCGGAGGCCCGCGCCATCTTATAATGGCGATTGCT
CGCGGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACACATGCGATT
GCTCGCAGCACTTACCGGCTCTCCACAGCTAGTGTTCTGTTTTATTGCTA
CAGATTGATGTGTCTGGGGGAAGGTCTGCAGGCAGCCTACCAGGGTTTCT
GGTAGTTGGGGTCTGTGACCTATTTTCTGCTTTGAAGCCTTCATTGCATA
TTATTCNGTAACCCCGCCCCACCTACACAGTTTCACTAACTTATCAGTGA
ATTAGACACATGAAGAATAGACATTTCACCTCAGAAGTGAAGGAGATGAA
CAAGAATTGTACCAGGCTTTATATAATTTATTTTATGTTATTATTATTAT
TTATTATTAATTTGCAAGATTATTAATTCATTTACTCAATGACATCTTGA
CATTTGGTTCATACATACTGAGTTGAGATTAAACAGAAAAGAAAATAAGA
ACAAATAACAATGACTTTCATTATAACAAATTGTTTTTATAACAAAGATT
CAATTCATGAACAATTCTAAAATGATTCTAAGTCTTGATTTATAAATGGT
TTTAAATGAAGTATACCAATGACCCTCAAAAAATAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k10.g1 MSMg01no274_k10.g1 CHROMAT_FILE:
MSMg01no274_k10.g1 PHD_FILE: MSMg01no274_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:14 2005
         (361 letters)



>mm_chr1_67487771_67488531
          Length = 761

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagtttcactaacttatcagtgaattagacacatgaagaatagacatttcacctcag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 700 acacagtttcactaacttatcagtgaattagacacatgaagaattgacatttcacctcaa 641

                                                                       
Query: 61  aagtgaaggagatgaacaagaattgtaccaggctttatataatttattttatgttattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aagtgaaggagatgaacaagaattgtaccaggctttatataatttattttatgttattat 581

                                                                       
Query: 121 tattatttattattaatttgcaagattattaattcatttactcaatgacatcttgacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tattatttattattaatttgcaagattattaattcatttactcaatgacatcttgacatt 521

                                                                       
Query: 181 tggttcatacatactgagttgagattaaacagaaaagaaaataagaacaaataacaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggttcatacatactgagttgagattaaacagaaaagaaaataagaacaaataacaatga 461

                                                                       
Query: 241 ctttcattataacaaattgtttttataacaaagattcaattcatgaacaattctaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctttcattataacaaattgtttttataacaaagattcaattcatgaacaattctaaaatg 401

                                                                       
Query: 301 attctaagtcttgatttataaatggttttaaatgaagtataccaatgaccctcaaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 attctaagtcttgatttataaatggttttaaatgaagtataccaatgaccctcaaaaaat 341

            
Query: 361 a 361
           |
Sbjct: 340 a 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)