BAC Information

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BAC

Clone NameMSMg01-274P07
Chromosome1 (Build37)
Map Location 93,406,026 - 93,406,546
singlet/doubletsinglet
Overlap geneTraf3ip1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2
Downstream geneAsb1, Twist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274P07.T7 (MSMg01no274_p07.b1)MSMg01-274P07.TJ (MSMg01no274_p07.g1)
ACCAG413538AG413539
length742742
length of high quality
(start - end)		522 (64 - 585)220 (69 - 288)
definitionCHROMAT_FILE: MSMg01no274_p07.b1 PHD_FILE: MSMg01no274_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:36 2005CHROMAT_FILE: MSMg01no274_p07.g1 PHD_FILE: MSMg01no274_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCAC
CCTCATCCGCTTGGAAGAACTATGACTATAAGATTCAGTGAGCTGGTGGC
AGCTCAGTGGACTTTCTCTTCCCAGTCTCATCGCCAGCCACTGGCTCACC
AGAGGCCCTTCAGCCAGGCTGGCACCACACCAGACATTCTGCCTTTCTTG
AGTGGGTCAGCATTTGAGCAAATGTCCTGATTCCAAGGTACCCAAGACAC
AGGGTGTGGGTGTTTGGTTCACACCATGAGTCTTGCGACCACTCTAAAGA
ACAAGGGATTCTGGCACAAGTGTTTGGCATGAATAGACCCCTAGGCCCTT
CTGGAATCCCTATGATACTTAGAAGATTACAAGACAATATTATACTTATG
AACTTGGTAGCAGTTCACTGTGTCAGAACTTACTGAGTTCATCTTACCTC
ACTTGTTTGGTAAGTGCAGCATTTGTAAGTTTAACACTTATTTCCATTGT
GCAATTTCATGTCAGGAAGAAGGGACTCTAGAGCCAGTGACAATAACCCT
TTCCCTGAAAAGGAATCATAAGGCTTCCTACCGTAAAGCTAATAAGGACC
ATAGTATGAAGCATTTTGGTAAGACATCTTGAGCAGTATCGAGGCTGGGT
AGCGCGTCTGACAACGGAACCCACTATCCATTGTCTGGCCCTTTGCTCTG
GTTGATCTCTTAGTCGGAGGGTGGCCATTCACGTCTTGCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCCTCAGAACTCACATAAAAAGCCAGGCAT
GGCAACAGTGTTCTACACTCCTAGGGCTCCCTGGTTAGTCAGCCTAGCCT
ACTTAGCCAATGAGAGACTCTGTCTTTAAAAAAAAACAAAGCAGATATCC
CCTTTAAAAACTGACACTCAAGGTTGTCTTGTAGTCTCCTCAGATATCCA
CACACACCTACCCACATACACATACACACACACACACACACACACATCAC
ACACACACACACACACACTTTCACATATGCATGCATGTGCCCCTGGAACA
ACACATTCTTTTTTATACTCACACTCACACCACCTTTTAAATTTAACTCT
GACCAAACCATGTTCCATAACAGAATGGAAGTAGATCACTAGGCCAGCTG
TGCAAAAGAAAAACACACACACACAGAGTTCTAAAGAATATATGGTTAAT
ATGCGACACAGGCGCTCCCTGGAATAGGGACCAACCACCTCTACCTCTTT
TACTGTGTCCAGTTTCCAGTCATGGCTTACTCTAACAAAGCTTCTCATCT
GTAACCACTGTGGGTACCTTATTGCCTCCTCGCCTGCGACTACCACTGTC
CAGTGTCAGCAATGCATAACGTTCATCTCAGATTATTCAGGGCCCCAAAA
TGTGCCCCAAAAGGCACAGGACTTTTTTGTTCTCCTAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_p07.b1 MSMg01no274_p07.b1 CHROMAT_FILE:
MSMg01no274_p07.b1 PHD_FILE: MSMg01no274_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:36 2005
         (522 letters)



>mm_chr1_93405826_93406746
          Length = 921

 Score =  955 bits (494), Expect = 0.0
 Identities = 515/522 (98%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaactatgactataagattcagtgagctggtggcagctcagtggactttctcttccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gaagaactatgactataagattcagtgagctggtggcagctcagtggactttatcttccc 260

                                                                       
Query: 61  agtctcatcgccagccactggctcaccagaggcccttcagccaggctggcaccacaccag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 agtctcatcgccagccactggctcaccagaggcccttcagccaggctggcaccataccag 320

                                                                       
Query: 121 acattctgcctttcttgagtgggtcagcatttgagcaaatgtcctgattccaaggtaccc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattttgcctttcttgagtgggtcagcatttgagcaaatgtcctgattccaaggtaccc 380

                                                                       
Query: 181 aagacacagggtgtgggtgtttggttcacaccatgagtcttgcgaccactctaaagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacacagggtgtgggtgtttggttcacaccatgagtcttgcgaccactctaaagaaca 440

                                                                       
Query: 241 agggattctggcacaagtgtttggcatgaatagacccctaggcccttctggaatccctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggattctggcacaagtgtttggcatgaatagacccctaggcccttctggaatccctat 500

                                                                       
Query: 301 gatacttagaagattacaagacaatattatacttatgaacttggtagcagttcactgtgt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacacttagaagattacaagacaatattatacttatgaacttggtagcagttcactgtgt 560

                                                                       
Query: 361 cagaacttactgagttcatcttacctcacttgtttggtaagtgcagcatttgtaagttta 420
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaacttactgagttcatcttagttcacttgtttggtaagtgcagcatttgtaagttta 620

                                                                       
Query: 421 acacttatttccattgtgcaatttcatgtcaggaagaagggactctagagccagtgacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacttatttccattgtgcaatttcatgtcaggaagaagggactctagagccagtgacaa 680

                                                     
Query: 481 taaccctttccctgaaaaggaatcataaggcttcctaccgta 522
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 taaccctttccctgaaaaggaa-cataaggcttcctaccgta 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space:   466432
Effective search space used:   466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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