BAC Information

Click to search

BAC

Clone NameMSMg01-275A12
Chromosome1 (Build37)
Map Location 185,630,490 - 185,630,774
singlet/doubletsinglet
Overlap genenone
Upstream gene4922505E12Rik, Susd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275A12.T7 (MSMg01no275_a12.b1)MSMg01-275A12.TJ (MSMg01no275_a12.g1)
ACCAG413592AG413593
length738737
length of high quality
(start - end)
367 (372 - 738)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no275_a12.b1 PHD_FILE: MSMg01no275_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:41 2005CHROMAT_FILE: MSMg01no275_a12.g1 PHD_FILE: MSMg01no275_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTCCTCCATCTATGGTAATTGAAAGTTTGGCTGGGTATTGTATC
CTGGGCTGGCATTTGCGTTCTCTTAGTGTCTGTATAACATCTGTCCAGGA
TCTTCTGGCTTTCATAGTCTCTGCTGAAAAGTCTGGTGTAATTCTGATAG
GCCTGCATTTATATGTTACTTTACCCTTTTCCCTTACTGCTTTTAATATT
CTATCTTTATTTAGTGCATTTTCTGTTCTGGTTATTATGTGTCGGGAGGA
ATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTGTATGT
TCATGGTCATGTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTATAATTTTG
TTAAAGATATTTGCTGGGCCTTTGAATTGAAAATCTTCATTCTCATCTAC
TCCTATTATCCTTAGTTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGA
TGTTTTGACTTAGGATCTTTTTGCATTTTGCATTTTCTTTGATTGTTGTG
CTGATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCATCTC
TTGTATTCTGCTGCTGGTGCTCGCATCTATGGTTCCAGATTTCTTTCCTA
GGGTTTCTATCTCCAGCTTTGCCTCACTTTGGGTTTTCTTTATTGTGTCC
ACTTCCCTTTTTAGGTCTAGTATGGTTTTGTTCATTTC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTCCAAGGAGTGCCCTTGAGCCTTT
CCAGCCTATCCAATGCTAGACAACCCCACACTGCCGGCTGTCTCTCTCAC
TGGGAGGCAAAGGTCCTGTGGTAGAACAGCTATGGAACCTGACAAATGGC
ACTGGGGTCTGTACCTTGATCACCAACCACTGAGACCTCAGACACACATT
TAGTCTTCTTTACTCTTCCATGAAAAATAATCATAGGTATCCTGCTGATA
AATGAAATAATTAACCTACTCTGTAAAAGCCTAAAAAAAGTATCATGTTT
TTACTTGATTATTATTTACCCCACCCACAATCCCCAAAACAATAAGGTGG
CATAAGAGGCTTATGTATGCGTGTATCGAGTCCTAATAAAGCACACATGG
GGACATTCATGGCAGTGTCGCAAGCCAGTGCGAAGTGCCACACTATGAAG
CTGAAGCCCAGCCTGGACTCTGAGATCACTTTCAAGGATGCACTTTCTCA
TGAACTCAGGCTGGTCCTAGAAAGAGCTGAGGGCAGCCATACTCTCTGTT
CAGTGTAGTTGGGGGCTAAAGACACAGTGTCTAGAAAGACGCTGTCTAAG
CCAGAGCACCTAGCTTTGCCTCTCATTTCCAAAGTGATCTATCTTGGGCT
TCTCACTTAAGATTTTATACCTCTCCTTCTGCAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_a12.g1 MSMg01no275_a12.g1 CHROMAT_FILE:
MSMg01no275_a12.g1 PHD_FILE: MSMg01no275_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:41 2005
         (288 letters)



>mm_chr1_185630290_185630977
          Length = 688

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctccaaggagtgcccttgagcctttccagcctatccaatgctagacaaccccacactg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 acctccaaggagtgcccttgagcctttccagcctatccaatgctggacaaccccacactg 426

                                                                       
Query: 61  ccggctgtctctctcactgggaggcaaaggtcctgtggtagaacagctatggaacctgac 120
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 425 ccagctgtctctctcactgggaggcaaaggtcctgtggtagaacagctatggaacccgac 366

                                                                       
Query: 121 aaatggcactggggtctgtaccttgatcaccaaccactgagacctcagacacacatttag 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 365 aaatggcactggggtctgtaccttgatcaccaaccactgagacctcaggcacacatttag 306

                                                                       
Query: 181 tcttctttactcttccatgaaaaataatcataggtatcctgctgataaatgaaataatta 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 305 tcttctttactcttccatgaaaaacaatcataggtatcctgctgataaatgaaataatta 246

                                                        
Query: 241 acctactctgtaaaagcctaaaaaaagtatcatgtttttacttga 285
           |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 245 acctactctgtagaagcctaaaaaaagtatcatgtttttacttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)