BAC Information

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BAC

Clone NameMSMg01-275G15
Chromosome1 (Build37)
Map Location 90,115,991 - 90,116,532
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a7c
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a10, Ugt1a9, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneLOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G15.T7 (MSMg01no275_g15.b1)MSMg01-275G15.TJ (MSMg01no275_g15.g1)
ACCAG413874AG413875
length740740
length of high quality
(start - end)
609 (43 - 651)194 (122 - 315)
definitionCHROMAT_FILE: MSMg01no275_g15.b1 PHD_FILE: MSMg01no275_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005CHROMAT_FILE: MSMg01no275_g15.g1 PHD_FILE: MSMg01no275_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTTATCTTCCACAGGTCCCAAAGCAACATAACCACATGATCAGGGAT
GAAAAGTCTATAGCTAGCCCACAATAAACTATTGCTCATGAGTTGCTACA
TCTCAGGTATTTGTTACAGTAACATAAAGTTTATTAACACACCTATTGTT
TTGACAAATACACATAAAACATTACAGACATTCTGTATTAGTCAGTTTTG
CATCAGCATAATGAAATAACCAAAGCAAGTAAGTTAAAAGAGAGAAGGGC
TGTTTAACTTAGAGGTTATCTTGCTTTGGCTCAGTTCTGTGAGGGTAACA
GAAGGTGGCATATCAAACAGGAGCATGTACATGAACAAACCGTGAATTAT
ATCTTGAGGCAGGAACAGGGAGCTAGAGTCTGGGCTGTCACAATCCTCTT
TGAGGAAGATCTTTAATGACCTATGGGCATTTTAATAGGCCCTACCTGAA
AAAAAAAGTTTTCCCTGCTTCTCAATAGCACACACTGAAGACCAAGCTTT
TATCACATGGCTCTTTGGGGACATTTCAGATTCAAGCTATTGAAGAACAA
AAAAATTACTGAACTCTTCCTCATCCCAGAGCCCGACCCCTCCCATCTAG
AGAGTGTTCCTAGAACACTCCTGATCTCTTCACCCCATAATGCATTTCTG
AACTCCTCACCCTAGAGTTCGAACCCTCCTAACTATATAC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCACAAAAATCACTCTTGCACTTGCGCATAAGGCTTGTTTA
CTAGTTAGGTGATTTGGACGGCAGCACTATCATATAATGGTGATTGCTCA
CGGCACGGCTCTCCTCATTTCCCCCTTTTATTTTATTAAAATTTGAGGCT
GGTCTAGGCCTCTGCAGTCATGTCCATCTGCTGTGGCTCCTGTCTTATGT
CATTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCCA
CCGGGTCCCATGTTTTAGTTTGTTCTGNACATGAGGAAAGTTGCCCATCT
CTGGTTTTTTTTTTACCCCCCCCCCCCAACTGCCAAATGACCTAGGGCGA
ACTCTATAANAGAGGCCAGAAAAATATAAAATCAGTGGGGGGGGGCGAAG
TGCAAATGCTGATTAATGAGCATTGAGTATCTCTCATCCCAGTGCAATGG
ATCCACAAATCCGTGGGACACAATAACAGAGAACTCAAATGCCATTTAGG
TCTTAAGCATGGACAGCAAAATTTCAGGGGAGGCCCCTTGTTCAATGGCT
GACAGTGCTTGAGCAATAACGACCTTGTCAAAGGTTTGATGGGTTCCTGA
TCTTTTTTTTCTACCGGAGCATAAACACAAGTCCACAGCATATGGCAGCA
GCAAATAAAACCACCCCCATCCATTCCTTACAATAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g15.b1 MSMg01no275_g15.b1 CHROMAT_FILE:
MSMg01no275_g15.b1 PHD_FILE: MSMg01no275_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:09 2005
         (609 letters)



>mm_chr1_90115785_90116793
          Length = 1009

 Score =  996 bits (515), Expect = 0.0
 Identities = 536/543 (98%), Gaps = 2/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctcttatcttccacaggtcccaaagcaacataaccacatgatcagggatgaaaagtc 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctcttatcttacacaggtcccaaagcaacataaccacatgatcagggatgaaaagtc 266

                                                                       
Query: 67  tatagctagcccacaataaac-tattgctcatgagttgctacatctcaggtatttgttac 125
           ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatagctagcccaaaataaacct-ttgctcatgagttgctacatctcaggtatttgttac 325

                                                                       
Query: 126 agtaacataaagtttattaacacacctattgttttgacaaatacacataaaacattacag 185
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtaacataaagtttattaacatacctattgttttgacaaatacacataaaacattacag 385

                                                                       
Query: 186 acattctgtattagtcagttttgcatcagcataatgaaataaccaaagcaagtaagttaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acattctgtattagtcagttttgcatcagcataatgaaataaccaaagcaagtaagttaa 445

                                                                       
Query: 246 aagagagaagggctgtttaacttagaggttatcttgctttggctcagttctgtgagggta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagagagaagggctgtttaacttagaggttatcttgctttggctcagttctgtgagggta 505

                                                                       
Query: 306 acagaaggtggcatatcaaacaggagcatgtacatgaacaaaccgtgaattatatcttga 365
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 506 acagaaggtggcatatcaaacaggagcatgtacatgaacaaaccatgaattatatcttga 565

                                                                       
Query: 366 ggcaggaacagggagctagagtctgggctgtcacaatcctctttgaggaagatctttaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggcaggaacagggagctagagtctgggctgtcacaatcctctttgaggaagatctttaat 625

                                                                       
Query: 426 gacctatgggcattttaataggccctacctgaaaaaaaaagttttccctgcttctcaata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacctatgggcattttaataggccctacctgaaaaaaaaagttttccctgcttctcaata 685

                                                                       
Query: 486 gcacacactgaagaccaagcttttatcacatggctctttggggacatttcagattcaagc 545
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 686 gcacacactgaagaccaagcttttatcacatggctctttgggggcatttcagattcaagc 745

              
Query: 546 tat 548
           |||
Sbjct: 746 tat 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)