BAC Information

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BAC

Clone NameMSMg01-275H08
Chromosome1 (Build37)
Map Location 44,128,767 - 44,129,050
singlet/doubletsinglet
Overlap geneEG666713
Upstream geneTgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik
Downstream gene1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H08.T7 (MSMg01no275_h08.b1)MSMg01-275H08.TJ (MSMg01no275_h08.g1)
ACCAG413906AG413907
length764762
length of high quality
(start - end)
315 (40 - 354)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no275_h08.b1 PHD_FILE: MSMg01no275_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005CHROMAT_FILE: MSMg01no275_h08.g1 PHD_FILE: MSMg01no275_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACTTCTGCACATCTATGACCCAAATGCAAGGGCACCCACATTTGTAAAA
GAAATGTTACTATAGTTCCAAGTACACATGGCACCTCACACAATAATAGT
GGGAGGCAATCCCACTAAAATCAGAGACCAGACAAGATTGCCCCCTCTCT
CCCTTTCTATTCAATACAGTACTCAAAGTTCTAGCCTGAGCAAATAGACA
ACAATAGGTGGTTAAAGGGATACAAATTAGAAAGGAATAAGTCAAGATAT
TCCTATCTGAGAATAGGATAAGTGACTCCAAAAATTCCACCAGAGAACTC
CTAATCTTTGATTTCAACCCCACCACAGTGGCTAGATATAAAATTAACTC
ACACTGATCTCTACTCAAAGGATAAATGGACTGAGAACGAAATTAAGGAA
ATGATACCCTTCATAATAGTCACAAACAATATAAAATACCTTGGTGTGAC
TCTAATCAAGGAAGTGAAAGATGTGTATGACAAGAGCTTCAAGACTCTGA
AGAAAGAAATCAAAGAATACCTCAGAAGATGGAAAGATCTCCCATGCTCG
TGGATCAGCAGGATTAACATAGTAAAAATGGCCATCTTTCCAAAACAATC
TACAGATTCAATGCAATCCCCATTAACATTCCAACCCAATTCTTCACAGA
GATAAAAAGAGTAATTCTTAAATTCATCTGGAATAACAAAAAAACCTAGG
ATAGTGAAAACTAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTTGGTTTCTCCAACACCAGAAAAATTA
CTGATGGGAACCTCTCTGACCCAAGCAAGAGAAAGCAATGTTCCAAATAG
TGGAAATGATACAAGGGAAATTAGTTGTGGTTTTACCCACGAAGCTTTAT
TGTGGCTTTTAAGTCACTGCATGCCTGTTTTGCCTCGTTCTAAAAAGAAA
AAAGACCAGACAAAATTCACAAATGGAAGTATAGTGAGGCTGAAGTACAT
GAATAAGGTGAAACCACCAGCTTCAAAACCATTCAATATCAGAGGCAATA
AAAATATGNCTAANTACANTTNACGGNTCCCTTTAAAAAGATAAGCCAAG
CTAAAGCATTTTTACCTGAATAAAAAACAAACTTTGCGCAGCCGTCGATA
GCAGAAGGCAGGGGCTATTCCATCATGCTCCACTAAAGCAAGGAGAACTA
GCAAGCAAACTATGTGTTGCTTGCACTGCTGAAAGTAGTGCATTCTACAA
TAAAGAGAAGAAACCTGAAAGAGGGAAACAAAACCCCTCTTTACAGGTAT
TTCAGCCTGGCCAACACCTGGGGGCTGATGTGGATCAAAGGAAGGAAACT
CTCCCAGACCTATCACCCTCCTCTACCAGTCAAGAACAGCCTGTTAACAG
TCAAAGGATAAAAGTCCCAGAAGATGCCCTGCAAAATGCTTTAAAGGCTA
ACCTCCAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h08.g1 MSMg01no275_h08.g1 CHROMAT_FILE:
MSMg01no275_h08.g1 PHD_FILE: MSMg01no275_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:12 2005
         (284 letters)



>mm_chr1_44128567_44129250
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttggtttctccaacaccagaaaaattactgatgggaacctctctgacccaagcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 cagttggtttctccaacaccagaaaaattactgatgggaacctctctgagccaagcaaga 425

                                                                       
Query: 61  gaaagcaatgttccaaatagtggaaatgatacaagggaaattagttgtggttttacccac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaaagcaatgttccaaataatggaaatgatacaagggaaattagttgtggttttacccac 365

                                                                       
Query: 121 gaagctttattgtggcttttaagtcactgcatgcctgttttgcctcgttctaaaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaagctttattgtggcttttaagtcactgcatgcctgttttgcctcgttctaaaaagaaa 305

                                                                       
Query: 181 aaagaccagacaaaattcacaaatggaagtatagtgaggctgaagtacatgaataaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 304 aaagaccagacaaaattcacaaatggaagtatagtgaggctgaagtatatgaataagatg 245

                                                       
Query: 241 aaaccaccagcttcaaaaccattcaatatcagaggcaataaaaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaaccaccagcttcaaaaccattcaatatcagaggcaataaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)