BAC Information

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BAC

Clone NameMSMg01-275H09
Chromosome1 (Build37)
Map Location 131,845,705 - 131,845,937
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H09.T7 (MSMg01no275_h09.b1)MSMg01-275H09.TJ (MSMg01no275_h09.g1)
ACCAG413908AG413909
length764762
length of high quality
(start - end)
549 (69 - 617)236 (122 - 357)
definitionCHROMAT_FILE: MSMg01no275_h09.b1 PHD_FILE: MSMg01no275_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005CHROMAT_FILE: MSMg01no275_h09.g1 PHD_FILE: MSMg01no275_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTGTACCAAACCAAATGGGTGAGAAGCACCTAAAAAATGTTCA
ACATCCTTAGACATCATGGACATGCAAATCAAAACAACCCTGAGATTCCA
CTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGTGACAGCAGATG
CTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATT
GCAAGCTGGTACAGCCACTCTGGAAATCAGTTTGGCAGTTCCTTAGAAAA
CTGGACATAGTATTACCTGAGGACCCAGCAATGCCATTCCTGGGCGTATA
CCCAGAAGATGTTCCAACATGTAACAAGGACACATTCTCCACTATGTTCA
TAGAAGCCTTATTTATAATAGACAGAAGCTGGAATGAACCCAGATGTCTT
TCAACAGAGTGATGGATACAGAAATTGTGGTACATTTACACAATGTATTC
ATTAGCTATTAAAAACAATGCATTTATGAAATTCTTAGGCAAATGGATGG
ATCTAGAGGATATCATCCTGAGTGAGGTAACTCAATCACCAAAGAACACA
CATTATATGCACTTACTGATAAGTGGATATTAGCCCATAAGGTCAGAATA
CACCAGATATAATTCACAACACACATGAAACTCAAGAAGAAGGAAGACCA
AAGTGTGCATACTTCAGTCCTTCTTAGAAGGGGGATAAATACTCATGCAA
AGAAGTACAGAGAC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTGCCCGCGAAATTCCTAGGTAGTAGGAGTACTTGACTGAAGACA
GATCACAAGAGGAGCCACCAGTACAGATCTAGGCCTTTTCTATCTCTGAT
GGTAGTCCTGCTTTAAGCACAGAGAAGGAAGGTGACAGAGCTGACCAAAG
TCTGAGTGTTTGTCCTCTGGTATGGCAGAAGAACTCTGGGTAAAGAACAT
CAGTGAAAATGGAGGAGAGAAGCTGAAGTCAGAACTAGGGATGCTAGCCT
GTTAGGAAAGAACTCATTTTATATCAGCAGATGTGTGTCTGCTGTAGGGC
ATGTTGTGTCCTGTGACCATACACTTCAAGATACAGGAGGTAGAAGGAAG
GGAGAAAGAACAAGCTAGAGGTGGATCCCAGCCTGACACTGATCCTCATT
CTGTTGTCAATCAAAACTGCATCTTTCTGACCTCCATCCTCTGTCATTAG
GCCTGAGATGATACATGATGCACCTTTGTCAATGAGCTGTTCTATAGACA
GGGCCACAGACCTTAGCTTCAAACCTTTCATAAGAAAGCTTTTGCTTTCG
TAACATAGATTAGCTGATATCTTAAAGAAGTCCCTGGAAAACTAGCTGAC
TTTAAAGAGATGAGCAATATCAACATTTCCATTTGCTGAAAAGTACCTTT
TTCTCAGAATGATTGACAAGTACAAAAAAAAATTGAGAAAAGAAATGAGC
CAGGCAGCGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h09.g1 MSMg01no275_h09.g1 CHROMAT_FILE:
MSMg01no275_h09.g1 PHD_FILE: MSMg01no275_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:12 2005
         (236 letters)



>mm_chr1_131845505_131846140
          Length = 636

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagatctaggccttttctatctctgatggtagtcctgctttaagcacagagaaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagatctaggccttttctatctctgatggtagtcctgctttaagcacagagaaggaag 260

                                                                       
Query: 61  gtgacagagctgaccaaagtctgagtgtttgtcctctggtatggcagaagaactctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacagagctgaccaaagtctgagtgtttgtcctctggtatggcagaagaactctgggt 320

                                                                       
Query: 121 aaagaacatcagtgaaaatggaggagagaagctgaagtcagaactagggatgctagcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaacatcagtgaaaatggaggagagaagctgaagtcagaactagggatgctagcctg 380

                                                                
Query: 181 ttaggaaagaactcattttatatcagcagatgtgtgtctgctgtagggcatgt 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggaaagaactcattttatatcagcagatgtgtgtctgctgtagggcatgt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)