Query= MSMg01no275_k08.b1 MSMg01no275_k08.b1 CHROMAT_FILE:
MSMg01no275_k08.b1 PHD_FILE: MSMg01no275_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:25 2005
(695 letters)
>mm_chr1_4830436_4831530
Length = 1095
Score = 1195 bits (618), Expect = 0.0
Identities = 669/690 (96%), Gaps = 11/690 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggacatcacaggctatatcaaaaaacttctctcaaaaacttctctcaaaaac 64
||||||||||||| || |||||||||| |||||||||||||||||| | | ||||||
Sbjct: 1054 gaattccaggacagcagaggctatatcgaaaaacttctctcaaaaa---cac-caaaaa- 1000
Query: 65 accaa-aaaattaaaatagccactggattatgtacaatgctcatttgtaaaaggtgatca 123
|| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 999 ---aataaaat--aaataaccactggattatgtacaatgctcatttgtaaaaggcgatca 945
Query: 124 gatttttaaaatttaattgaataaaatattaaaatttttgttaattttattctattgtga 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 944 gatttttaaaatttaattgaataaaatattaaaattttggttaattttattctattgtga 885
Query: 184 actcactacttctttaaatcatcaacatccaaattttttatcttggaaatataacatgga 243
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 attcattacttctttaaatcatcaacatccaaattttttatcttggaaatataacatgga 825
Query: 244 agaaattaaaacagtgactctactcactgcttccagagacacctacctgctgacatgagc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agaaattaaaacagtgactctactcactgcttccagagacacctacctgctgacatgagc 765
Query: 304 tgtgcatcatgccttcatagattttgaaggttacattggctggatttatcaatgctttta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgtgcatcatgccttcatagattttgaaggttacattggctggatttatcaatgctttta 705
Query: 364 gtctttcaacagtaagagaaccaaacattaggggaactaaagggtcacaatctccatggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gtctttcaacagtaagagaaccaaacattaggggaactaaagggtcacaatctccatggc 645
Query: 424 actggagaacggaaatatctcgattagcactgttgatcggcccctgcaagacaaacacaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 actggagaacggaaatatctcgattagcactgttgatcggcccctgcaagacaaacacaa 585
Query: 484 aggcaatgttatgtatcagatacataaagcactgtgccagactctatgtgtgcatatgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggcaatgttatgtatcagatacataaagcactgtgccagactctatgtgtgcatatgct 525
Query: 544 attactcataattcagtcaaatgtcttggcaaagtacagtcccacctcaatcattttgtt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 attactcataattcagtcaaatgtcttggcaaagtacagtcccacctcaatcattttgtt 465
Query: 604 ccctcaatgtctttaaacttctatggcatacatgattatgttacatgtattatattacat 663
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 464 ccctcaatgtctttaaacttctatggcatacatgattatgttgcatgtattatattacat 405
Query: 664 gtttccaatgaatcagtttctttttttttt 693
||||||||||||||||||||||||||||||
Sbjct: 404 gtttccaatgaatcagtttctttttttttt 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_k08.g1 MSMg01no275_k08.g1 CHROMAT_FILE:
MSMg01no275_k08.g1 PHD_FILE: MSMg01no275_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:25 2005
(657 letters)
>mm_chr1_4726375_4727430
Length = 1056
Score = 1189 bits (615), Expect = 0.0
Identities = 653/679 (96%), Gaps = 23/679 (3%)
Strand = Plus / Plus
Query: 1 actttccaaatttctcaaactctatctaatgccctagacataccctggtattttcttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttccaaatttctcaaactctatctaatgccctagacataccctggtattttcttatt 260
Query: 61 ccctaccaccccatcttcaggaaaggtagaaagaactaaccactccctaaaaaccactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctaccaccccatcttcaggaaaggtagaaagaactaaccactccctaaaaaccactcc 320
Query: 121 tgtctaactgtcacaggaacttcacctcgattgggtaaaactcctacctctgtctctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctaactgtcacaggaacttcacctcgattgggtaaaactcctacctctgtctctctt 380
Query: 181 taggctatgagattgggtaaaactcctacctctgtctctctttaggctatgagctctgtc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggctatgagactgggtaaaactcctacctctgtctctctttaggctatgagctctgtc 440
Query: 241 cccaagcaacctcttttcatctcatctttcgaactcatgtatggacatctggtcctaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaagcaacctcttttcatctcatctttcgaactcatgtatggacatctggtcctaact 500
Query: 301 cctgaccactacagtttgattctcaggacctacatggcagaaggaaagaatcaagtccca 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 cctgaccactacagtttgattctcaggatctacatggcagaaggaaagaatcaagtccca 560
Query: 361 taagttatccttgaacctgc--acacacacacacacacac-------------------- 398
|| ||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ta-gttatccttgaacctgcgcacacacacacacacacacagacacaaacacacacacac 619
Query: 399 tcataataactaaataaatagaagtaaaataaataaataaataatcttttaaaaaatatt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcataataactaaataaatagaagtaaaataaataaataaataatcttttaaaaaatatt 679
Query: 459 attgttgagagtctattttatcctagtcagaatgggcattaccaagaaaaacacaagaaa 518
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 attgttgagagtctattttatcccagtcagaatgggcattaccaagaaaaacacaagaaa 739
Query: 519 ttcttggatgtgaggaaagaggaaccctcctttattgttgatagaagagtgaacaggtgc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcttggatgtgaggaaagaggaaccctcctttattgttgatagaagagtgaacaggtgc 799
Query: 579 agccactatggtagtgtagagattcctcaaaaacctaaaaacagaattactatatgactc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agccactatggtagtgtagagattcctcaaaaacctaaaaacagaattactatatgactc 859
Query: 639 atctatatcactcctgagc 657
|||||||||||||||||||
Sbjct: 860 atctatatcactcctgagc 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
