TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATAGCCTACCCGATTTATTTGCTATGTATAGCTGAAGTTCTGGCAG
GAGATATTTTCCTGTCTAGTCAGTTTCTACAACTGGAGGGATCAGCAAAT
ATCACCTGCTTGTTTGGCCTTCTTGATTTTCTCCTGTCTGTTGCCAAGAT
ATTCAGGGAGTCTCCTTTTATCAAATAAATCTGATCCTTATTATTTTGGA
AGGAATCCAAAGCCTTTTTTTTTTCCTGTTAACACAAATACAGAGCCTCT
CTCCCAACATAGCATGTCCTTTTTTCTTCCAGCCTAAAATCATTAAAAAA
TATAGATTGACCCAATTTGGCAGGCCCTTTTCTACTTAGGTCTGCTCCAT
TTTGACCTCCTTCAAAGAAGAATTACAATACCATCATAACCATTGAACAT
ATAACTACCTTCATTTGATAATTTAAAACAGTTAAAACATTTTAAAACAA
TTATTATTCATTGAGACAGGGTTTCTCTGTGTAGCCTGGGGTGACTTGAA
TTTGCTTTGTAGATTAGGCTGGCCTTGAACTCACAAGGAACGTATTTGTC
CCTGCCTTTGTCTCTCATGTATTGAGATCAAAGGCCAGGATTTATTTATT
AATTGTCTATGTACCCATGACAATGTATCAATTCCCATTTCTTTCTTCCT
TCATTGTAGATTAATATCTTTGTGAATAAATATC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGATTATGTTGTACCTGGCTACTAA
GGTCTATCATGTCCAGATAGACCTTCCTGGGTGCAAAAATGGAGACTCCT
TTCCTTAGCAGGGCTTCCTCTTCTCTGCCTGATCTGGGGAGCCCGATTCT
AATCTTCTACCTAAGGAATGCCATGTAGTCCTTGGAGAAGTGACAGGTGC
AACTTCCTGGAATGCTTCTCCATGCAAATGAAGTATCCCAAGAACTTTAA
ACCTCAGCCAATGAAACTTTACCTAAGAACCCCTACCCACTCTTAGGGGT
TCATATGTATATATCCCTTGATTCCCCTAATAAAGTATATGCACACAAGC
TGTTTCACTGACTATCATCTAAGAGAGTTGTAACACTCCGCCCCCACCCC
AATTCACTCCAGGACGGGGATCCTGGCAACCCACCCATTTCAGAATTTGC
TTCATCCTTTCCTATACAGTGCGCATCAGGGCCCAGACACTCTAAGGGAA
GACAGAGACCATGGAACCTGGCTCCACTCCATCCTTCCCTACTTGGTGTG
CAGTAGTGCTGGACATCCCAAGGGAAGAAGGGAAAACCGAAGCCACAAGA
ATGTTGGAAGAAAGCACCTCATCGACCTGTAAGATAAAGGTGTGGGANAG
TACTTTCTAGACTGGACCCCATTTGCTGAGTAATTA

Query= MSMg01no275_m09.b1 MSMg01no275_m09.b1 CHROMAT_FILE:
MSMg01no275_m09.b1 PHD_FILE: MSMg01no275_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:34 2005
         (627 letters)



>mm_chr1_121656880_121657906
          Length = 1027

 Score = 1133 bits (586), Expect = 0.0
 Identities = 615/626 (98%), Gaps = 3/626 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctatagcctacccgatttatttgctatgtatagctgaagttctggcaggagatat 64
            ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gaattctatagccaacaagatttatttgctatgtatagctgaagttctggcaggagatat 946

                                                                        
Query: 65   tttcctgtctagtcagtttctacaactggagggatcagcaaatatcacctgcttgtttgg 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 945  tttcctgtctagtcagtttctacaactggagggatcagcaaatatcacctgtttgtttgg 886

                                                                        
Query: 125  ccttcttgattttctcctgtctgttgccaagatattcagggagtctccttttatcaaata 184
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 885  ccttcttgattttctcctgtctgttgccaagatattcagggaatctccttttatcaaata 826

                                                                        
Query: 185  aatctgatccttattattttggaaggaatccaaagcc---ttttttttttcctgttaaca 241
            |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 825  aatctgatccttattattttggaaggaatccaaagcctttttttttttttcctgttaaca 766

                                                                        
Query: 242  caaatacagagcctctctcccaacatagcatgtccttttttcttccagcctaaaatcatt 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  caaatacagagcctctctcccaacatagcatgtccttttttcttccagcctaaaatcatt 706

                                                                        
Query: 302  aaaaaatatagattgacccaatttggcaggcccttttctacttaggtctgctccattttg 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  aaaaaatatagattgacccaatttggcaggcccttttctacttaggtctgctccattttg 646

                                                                        
Query: 362  acctccttcaaagaagaattacaataccatcataaccattgaacatataactaccttcat 421
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  acctctttcaaagaagaattacaataccatcataaccattgaacatataactaccttcat 586

                                                                        
Query: 422  ttgataatttaaaacagttaaaacattttaaaacaattattattcattgagacagggttt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  ttgataatttaaaacagttaaaacattttaaaacaattattattcattgagacagggttt 526

                                                                        
Query: 482  ctctgtgtagcctggggtgacttgaatttgctttgtagattaggctggccttgaactcac 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  ctctgtgtagcctggggtgacttgaatttgctttgtagattaggctggccttgaactcac 466

                                                                        
Query: 542  aaggaacgtatttgtccctgcctttgtctctcatgtattgagatcaaaggccaggattta 601
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465  aaggaacatatttgtccctgcctttgtctctcatgtattgagatcaaaggccaggattta 406

                                      
Query: 602  tttattaattgtctatgtacccatga 627
            || |||||||||||||||||||||||
Sbjct: 405  ttaattaattgtctatgtacccatga 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)