BAC Information

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BAC

Clone NameMSMg01-275N21
Chromosome1 (Build37)
Map Location 79,231,701 - 79,384,872
singlet/doubletdoublet
Overlap genenone
Upstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275N21.T7 (MSMg01no275_n21.b1)MSMg01-275N21.TJ (MSMg01no275_n21.g1)
ACCAG414203AG414204
length743741
length of high quality
(start - end)		375 (367 - 741)665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no275_n21.b1 PHD_FILE: MSMg01no275_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005CHROMAT_FILE: MSMg01no275_n21.g1 PHD_FILE: MSMg01no275_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,384,498 - 79,384,872)(79,231,701 - 79,232,365)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGCTCTAGCGAATGCAGTGATCCATTACAAGCCTTTGCCTGCC
TGACAATTCTATCATTTTCATCCCATCTCAGGTCCTTGCAGACTTACCTT
GTATGACATCAGAACAAACCATACATGGCTCTGTATGAGAATGCATGTCA
AGCATACAGTTGAGGGGAACATTAAGAAAAGGTTGGAGAAACAGTTTATC
TTACTCTTAGATTGCCTGTCCAGGTCTCAGAACTAAATTACAGGGTATCC
ATAGTACAACATACAATATAGAGACTTAGAATGACTGTAAATATATATTT
AGTTACATTATTATATGTACACATTTTATTGTTGAGTGAAAAGGCAAATT
ATAACATATTCTTTCAGGGTGATTTCATTTGTAAAGTTGATACACAAATG
GATACATGTAAACTTTTATCTTCATACACATGTATATTAATGCTTACCAA
ATAATGAAATAATAGAAGATTTCAACTAAATTACTGATGGTGAGCAACAT
GAATATGTAGCCTCAGAAAGCAGTAAGATCTTTCTTTGCCATTTTCTCCC
TCATAGATATTTACTTTTTTATGCTGCTGCTGGTTTTTGAGACAAGCTGC
TCTTAGAAAGCCCAAACTGACCTATAACTTGTTATGTAATCAGACTGGTC
TCAAGTTTACTGTCTTAACATCAACCTTGTGAGTTCTGGGATC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAACAACGTAGTAGGAGAA
GTGCATCTGGGCAGAGAACTTCATGAAATAGCATGGAGCTATCAAGGGAA
GGAGGGATCCCTTGAGAACCAGCCCCTTGGGAAGTAGTAGGAGCTATTGA
ATACCTTTGAAAATAGAAGTTGTGACCCTGCATCTGTGTGCCACTGGACC
TTCTACAAACATTTCTTCCTGTCTTTTGGATTGATCTGCATCACCAATCA
GGAATTGTTTACCATATTTTTAAGGAGTCCTCCATTATGCTACCCTGAGG
ATGGTTTTGAGGTGGGTTAGTACACTCTTAAACCACAACACAAGTACAGT
GCACATCCATTCTGTTGGCCAGATGCTGAAATGTTTGTTATATTTATATT
ACTCTTATTTATACCCCCCTTATCAACATACTCCATCCAAATATACACTA
GCATTCTATTTTGTAGAAGCTAGAATAAAAGCATCTTTGTTTTTCATTTG
CTTTTTCAAATCTTCAATCACATATAGATCGGTCAGTTACTTATTATTGT
TGTGTGTGTGTTTGCATATCTCTGTGATGTGTGAATGAGTGCTGGTGTGT
GTCAAATGCAGAGGACAGCTTTCAGAGGTTAACTCTTTACCTCCACTGTG
GGTTCCAGGTATCAAACTTAAGTTGTCAGGCTTGCATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_n21.b1 MSMg01no275_n21.b1 CHROMAT_FILE:
MSMg01no275_n21.b1 PHD_FILE: MSMg01no275_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:41 2005
         (375 letters)



>mm_chr1_79384406_79385180
          Length = 775

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtacacattttattgttgagtgaaaaggcaaattataacatattctttcagggtgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtacacattttattgttgagtgaaaaggcaaattataacatattctttcagggtgatttc 408

                                                                       
Query: 61  atttgtaaagttgatacacaaatggatacatgtaaacttttatcttcatacacatgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atttgtaaagttgatacacaaatggatacatgtaaacttttatcttcatacacatgtata 348

                                                                       
Query: 121 ttaatgcttaccaaataatgaaataatagaagatttcaactaaattactgatggtgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttaatgcttaccaaataatgaaataatagaagatttcaactaaattactgatggtgagca 288

                                                                       
Query: 181 acatgaatatgtagcctcagaaagcagtaagatctttctttgccattttctccctcatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acatgaatatgtagcctcagaaagcagtaagatctttctttgccattttctccctcatag 228

                                                                       
Query: 241 atatttacttttttatgctgctgctggtttttgagacaagctgctcttagaaagcccaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 227 atatttatttttttatgctgctgctggtttttgagacaagctgctcttacaaagcccaaa 168

                                                                       
Query: 301 ctgacctataacttgttatgtaatcagactggtctcaagtttactgtcttaacatcaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgacctataacttgttatgtaatcagactggtctcaagtttactgtcttaacatcaacc 108

                          
Query: 361 ttgtgagttctggga 375
           |||||||||| ||||
Sbjct: 107 ttgtgagttccggga 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_n21.g1 MSMg01no275_n21.g1 CHROMAT_FILE:
MSMg01no275_n21.g1 PHD_FILE: MSMg01no275_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:41 2005
         (665 letters)



>mm_chr1_79231501_79232565
          Length = 1065

 Score = 1208 bits (625), Expect = 0.0
 Identities = 655/665 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagaacaacgtagtaggagaagtgcatctgggcagagaacttcatgaaatagcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgtgagaacaacgtagtaggagaagtgcatctgggcagagaacttaatgaaatagcatgg 260

                                                                       
Query: 61  agctatcaagggaaggagggatcccttgagaaccagccccttgggaagtagtaggagcta 120
           |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctatcaagagaagtagggatcacttgagaaccagccccttgggaagtagtaggagcta 320

                                                                       
Query: 121 ttgaatacctttgaaaatagaagttgtgaccctgcatctgtgtgccactggaccttctac 180
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaaacctttgaaaacagaagttgtgaccctgcatctgtgtgccactggaccttctac 380

                                                                       
Query: 181 aaacatttcttcctgtcttttggattgatctgcatcaccaatcaggaattgtttaccata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaacatttcttcctgtcttttggattgatctgcatcaccaatcaggaattgtttaccaca 440

                                                                       
Query: 241 tttttaaggagtcctccattatgctaccctgaggatggttttgaggtgggttagtacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttaaggagtcctccattatgctaccctgaggatggttttgaggtgggttagtacact 500

                                                                       
Query: 301 cttaaaccacaacacaagtacagtgcacatccattctgttggccagatgctgaaatgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaaaccacaacacaagtacagtgcacatccattctgttggccagatgctgaaatgttt 560

                                                                       
Query: 361 gttatatttatattactcttatttataccccccttatcaacatactccatccaaatatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttatatttatattactcttatttataccccccttatcaacatactccatccaaatatac 620

                                                                       
Query: 421 actagcattctattttgtagaagctagaataaaagcatctttgtttttcatttgcttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actagcattctattttgtagaagctagaataaaagcatctttgtttttcatttgcttttt 680

                                                                       
Query: 481 caaatcttcaatcacatatagatcggtcagttacttattattgttgtgtgtgtgtttgca 540
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 681 caaatcttcaatcacatatagattggtcagttacttattattgctgtgtgtgtgtttgca 740

                                                                       
Query: 541 tatctctgtgatgtgtgaatgagtgctggtgtgtgtcaaatgcagaggacagctttcaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatctctgtgatgtgtgaatgagtgctggtgtgtgtcaaatgcagaggacagctttcaga 800

                                                                       
Query: 601 ggttaactctttacctccactgtgggttccaggtatcaaacttaagttgtcaggcttgca 660
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 ggttaactctttacctccactgtgggttccaggtatcacacttaagttgtcaggcttgca 860

                
Query: 661 tgatt 665
           |||||
Sbjct: 861 tgatt 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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