BAC Information

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BAC

Clone NameMSMg01-275O21
Chromosome1 (Build37)
Map Location 89,594,426 - 89,675,303
singlet/doubletdoublet
Overlap geneInpp5d, Atg16l1
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneSag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275O21.T7 (MSMg01no275_o21.b1)MSMg01-275O21.TJ (MSMg01no275_o21.g1)
ACCAG414249AG414250
length735736
length of high quality
(start - end)		616 (45 - 660)662 (75 - 736)
definitionCHROMAT_FILE: MSMg01no275_o21.b1 PHD_FILE: MSMg01no275_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:45 2005CHROMAT_FILE: MSMg01no275_o21.g1 PHD_FILE: MSMg01no275_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,674,710 - 89,675,303)(89,594,426 - 89,595,077)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCACTTGTACAACAGTATTAGCTTACTGTATAGCCCAGGCTAAC
CCTAAACTCAATGGTAATCCTCTGACTTTGGTCTCCTAAGCACTTGGGTT
ACAGGGGTTTGCTACCGTGTTGGTTTGTATTTATTTAAGCAAAAATTTAC
TTAAGTGAAATGTGTTCAAAATCATCCAGGTGTGGTAACATACACTTTTC
CCTCTAACCCAAGCCCCCAGAAAGCAAACACACTGCTGAAAGGTTAAGGC
CAGACAAGAAATACAATAATATACCCACACAAAAAAAAAGCACTTAAAAT
TAATGTATACTGACTAAAGTTTGCCTTTGCGTGTGTGGGCCAGAAGAAGG
TATCAGATCCCTTGAAGGTGGAGTGATAGATGGTCATGAGCTATCTGATG
TGAGAGTTGGGAACCAAATTTAGGTCCTCTTTAAAGAGCAGGAAAGCACA
CTTAACTACTGAGACATCTCTCTAGCCTCGGAATTGCCTCTTCTGTGCCA
AATACTTACTCCTATTATGTACCACTAATATCTACGTACATGGTAACATA
CAGCACCCTTAGGAAAGCGTGTGTGTGTGTGTGTGTGTGTGTGTNGTGTG
TGTGTGTGNNNNNNCNNNNTNNNTTNNCCTTTCTTTTTTTTTTTTTTCTT
CCCTCCCTTTCTTTTCCCTNTCTCTTCCCCCTTCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCAGCCAGGGCTATACAGAGAA
AAAAACCAAAAAGAAAAAAAAAGAACAGAAAAAGAATAATATTTACTTCC
TAGATGCATTTTCAGTCCCAGTTCTCATCTCTGAGGTGCTTTGTCTCATT
TCTAGGCATTGTTGGAAGTTCCCCCTGAAAGCTAGGAAATACAGACAGGG
TGTCTTACTCCCAGGGTGGAACCGGGGTGCATGTTCAGGGTTCCAAAGGT
GTACCTCAGTCCTGTGTTGCAACACCATCTCCCACCACCACCACCAGGTT
GCCATCCACACCCTCTGGAACATTCGCATAGCGGTGCTTGCCAAGCCAGA
GCATGAGAATCGGATCAGCCATATCTGCACTGACAACGTGAAGACAGGCA
TCGCCAACACCCTGGGTGAGCATAGAGGGAAAGCCATTCCTGTGCATGCT
CTCCTCTTCCTCCTTTTGGCAATGTCCCAGGATAAACCATGAGAGTCCTG
TCTTGGGATCCCTTCGTCTCTAGCAAATCCAGATGGTTTTCCTTGCAAAA
ACTCATCCAGGGTCTATACCAGCTCTGGCAATCTGGCTAAAATGTGGGTT
CTGTCTCAGTAAGTCTCAGATGGTTTCCATTCTGGCAAGCTTTCAGGTGA
CATAGTGCCAGCCAGTCCAGGGATCCAACTTGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_o21.b1 MSMg01no275_o21.b1 CHROMAT_FILE:
MSMg01no275_o21.b1 PHD_FILE: MSMg01no275_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:45 2005
         (616 letters)



>mm_chr1_89674655_89675669
          Length = 1015

 Score = 1093 bits (565), Expect = 0.0
 Identities = 589/597 (98%), Gaps = 4/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccacttgtaca-acagtattagcttactgtatagcccaggctaaccctaaac 63
           ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcatccacttg-a-atacagtattagcttactgtatagcccaggctaaccctaaac 592

                                                                       
Query: 64  tcaatggtaatcctctgactttggtctcctaagcacttgggttacaggggtttgctaccg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcaatggtaatcctctgactttggtctcctaagcacttgggttacaggggtttgctaccg 532

                                                                       
Query: 124 tgttggtttgtatttatttaagcaaaaatttacttaagtgaaatgtgttcaaaatcatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgttggtttgtatttatttaagcaaaaatttacttaagtgaaatgtgttcaaaatcatcc 472

                                                                       
Query: 184 aggtgtggtaacatacacttttccctctaacccaagcccccagaaagcaaacacactgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 aggtgtggtaacatacacttttccctctaacccaagcccccagaaagcagacacactgct 412

                                                                       
Query: 244 gaaaggttaaggccagacaagaaatacaataatatacccacacaaaaaaaaagcacttaa 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 411 gaaaggttaaggccagacaagaaatacaataatatacccacac-aaaaaaaagcacttaa 353

                                                                       
Query: 304 aattaatgtatactgactaaagtttgcctttgcgtgtgtgggccagaagaaggtatcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 aattaatgtatactgactaaagtttgcctttgcgtgtgtgggccagaaggaggtatcaga 293

                                                                       
Query: 364 tcccttgaaggtggagtgatagatggtcatgagctatctgatgtgagagttgggaaccaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tcccttgaaggtggagtgatagatggtcatgagctatctgatgtgagagttgggaaccaa 233

                                                                       
Query: 424 atttaggtcctctttaaagagcaggaaagcacacttaactactgagacatctctctagcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 232 atttaggtcctctttaaagagcaggaaagcacacttaactactgagatatctctctagcc 173

                                                                       
Query: 484 tcggaattgcctcttctgtgccaaatacttactcctattatgtaccactaatatctacgt 543
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 172 tcggaattgcctcttctgtgccaaatacttactcctattatgtatcactaatatctacgt 113

                                                                    
Query: 544 acatggtaacatacagcacccttaggaaagcgtgtgtgtgtgtgtgtgtgtgtgtgt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 acatggtaacatacagcacccttaggaaagcgtgtgtgtgtgtgtgtgtgtgtgtgt 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space:   609030
Effective search space used:   609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_o21.g1 MSMg01no275_o21.g1 CHROMAT_FILE:
MSMg01no275_o21.g1 PHD_FILE: MSMg01no275_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:45 2005
         (662 letters)



>mm_chr1_89594215_89595277
          Length = 1063

 Score = 1162 bits (601), Expect = 0.0
 Identities = 643/663 (96%), Gaps = 12/663 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcagccagggctatacagagaaaaaaaccaaaaagaaaaaaaaagaacagaaaaag 60
           |||||||||||||||||||||||| |||||||||||||||||          ||||||||
Sbjct: 212 cagggcagccagggctatacagag-aaaaaaccaaaaagaaa----------agaaaaag 260

                                                                       
Query: 61  aataatatttacttcctagatgcattttcagtcccagttctcatctctgaggtgctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataatatttacttcctagatgcattttcagtcccagttctcatctctgaggtgctttgt 320

                                                                       
Query: 121 ctcatttctaggcattgttggaagttccccctgaaagctaggaaatacagacagggtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatttctaggcattgttggaagttccccctgaaagctaggaaatacagacagggtgtc 380

                                                                       
Query: 181 ttactcccagggtggaaccggggtgcatgttcagggttccaaaggtgtacctcagtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactcccagggtggaaccggggtgcatgttcagggttccaaaggtgtacctcagtcctg 440

                                                                       
Query: 241 tgttgcaacaccatctcccaccaccaccaccaggttgccatccacaccctctggaacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgcaacaccatctcccaccaccaccaccaggttgccatccacaccctctggaacatt 500

                                                                       
Query: 301 cgcatagcggtgcttgccaagccagagcatgagaatcggatcagccatatctgcactgac 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcatagtggtgcttgccaagccagagcatgagaatcggatcagccatatctgcactgac 560

                                                                       
Query: 361 aacgtgaagacaggcatcgccaacaccctgggtgagcatagagggaaagccattcctgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacgtgaagacaggcatcgccaacaccctgggtgagcatagagggaaagccattcctgtg 620

                                                                       
Query: 421 catgctc-tcctcttcctccttttggcaatgtcccaggataaaccatgagagtcctgtct 479
           ||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||| 
Sbjct: 621 catgctcctcctcctcctccttttggcaatgtcccaggataaactgtgagagtcctgtcc 680

                                                                       
Query: 480 tgggatcccttcgtctctagcaaatccagatggttttccttgcaaaaactcatccagggt 539
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tgggatcccttcgtctctagcaaatccagaaggttttccttgcaaaaactcatccagggt 740

                                                                       
Query: 540 ctataccagctctggcaatctggctaaaatgtgggttctgtctcagtaagtctcagatgg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctataccagctctggcaatctggctaaaatgtgggttctgtctcagtaagtctcagatgg 800

                                                                       
Query: 600 tttccattctggcaagctttcaggtgacatagtgccagccagtccagggatccaacttgg 659
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 tttccattctgacaagctttcaggtgacatagtgccagccagtccagggatcccacttgg 860

              
Query: 660 aga 662
           |||
Sbjct: 861 aga 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space:   686556
Effective search space used:   686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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