BAC Information

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BAC

Clone NameMSMg01-276B23
Chromosome1 (Build37)
Map Location 171,512,992 - 171,513,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2
Downstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276B23.T7 (MSMg01no276_b23.b1)MSMg01-276B23.TJ (MSMg01no276_b23.g1)
ACCAG414393AG414394
length751752
length of high quality
(start - end)
355 (384 - 738)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no276_b23.b1 PHD_FILE: MSMg01no276_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:59 2005CHROMAT_FILE: MSMg01no276_b23.g1 PHD_FILE: MSMg01no276_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTTCTGTTACCAAGATAGCTGTTACAACATTAACATTGTGGACA
TGTATTGAGAAATTGTCTCAGGACGAACATGCTGTGGACTCAAGAGGAAA
TTCTGATTACCCCACACTACCCTGAAAACATAAACCAGCTTCCAGCACTA
ATCATGCCAACCTGATTGACTACCGACAACTGACAAGGGCTAGTGAGCTG
GCTAGCTCTGCTGTGCAAAGTAAGCTGGTTTTGTATGGACTTCTTTGTTC
AAGGAGCTTATCTCCCTGGAGACTTTAATTTGAGAAAGACTCAGGTTCTA
ATCTCTTGGGTAATTTCTTCACACGACCCCACTGAAAACTATCTTCTTAC
CCCATAGGTATGCAAAGATTTACCAAGAGGAAATATGACGGAATGTTTTT
GAAGTGGGTATTTTCCCATTTGGTCTTCCCATTTTGTTCTTTCTCTACAA
GCTAGTAGCCGTTTTTACTTGTCATTCTGGTAAGGGCCAAAAAGCTCTGT
GAGTCTTCTGATCTTGTTGTCCAGAACTTGGTAGAAAGAATTGAAGAAGA
TGTAAAATATTTTGGGAAATTTACAGAGCANAAAGTCAGGTGACTCTCAT
CCCTTTAACTAGAAGAACTACTTCTGCAGGTGAAGAGAAGGGGAGCCAGA
GGGAGTCGCTGGGAAGACAGTGCTCTGGGTCTTCGAGACAGAACAGCCTC
C
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTTTACCAGCTTTTGTTATT
CAAACCTTGTTCCTTGAGGGATTTAAAACTATTGTTCAAATAAAGATGCC
TACAGCCTATAGCTGGCAGAAGAGAGGTAGGAGGGTGTTTCACTTCCTGG
GCTTGGAGTCTGAGGAGATATCATGAGGAAGAAGGAGAGAAGAAGGTGGG
GAGAGAAGAGACCATGGAGTACGTAAGTCAGGAAAACATGGCCAAGAGAG
ATGGCCAATTGGAGTTAAGAGCAGCCCAGAAGGAACATAGCAAATTATAA
ATCAGGGTTATTGATAGTTTTTTAGCCACCCCGCCCTATCTGCCCAACTC
TAGTGCTTTAAAGGCCTATTGTAAATATCACAGTTTATGTCTTTTATCTG
GGAACAGAATGGCCAAAGGCAAGGTAGAAACCCTGATTGAGATTAGTTAT
TATTATAACAGACACTTGCTGTCCAGTGTACAACTTGAACTCAGTTCCTG
ATACCCACATAATGGAAGGAGAAAGCAGACTCCAGAAAGTTGTTACAGGA
TCACCACTACATAGGCACCATGGTATATGTGCACAAGCTTGTGCACACAT
GTATGTATGTGTGTGTAGGTGAGCTCTGTATGCATGTGTGTGCGCACACA
CTAAAAACATGCATTCATCATTATCAGCAATCTGCTAAATCACAATAAAA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_b23.b1 MSMg01no276_b23.b1 CHROMAT_FILE:
MSMg01no276_b23.b1 PHD_FILE: MSMg01no276_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:59 2005
         (355 letters)



>mm_chr1_171512792_171513546
          Length = 755

 Score =  681 bits (352), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaactatcttcttaccccataggtatgcaaagatttaccaagaggaaatatgacggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaactatcttcttaccccataggtatgcaaagatttaccaagaggaaatatgacggaa 260

                                                                       
Query: 61  tgtttttgaagtgggtattttcccatttggtcttcccattttgttctttctctacaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttttgaagtgggtattttcccatttggtcttcccattttgttctttctctacaagct 320

                                                                       
Query: 121 agtagccgtttttacttgtcattctggtaagggccaaaaagctctgtgagtcttctgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagccgtttttacttgtcattctggtaagggccaaaaagctctgtgagtcttctgatc 380

                                                                       
Query: 181 ttgttgtccagaacttggtagaaagaattgaagaagatgtaaaatattttgggaaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgtccagaacttggtagaaagaattgaagaagatgtaaaatattttgggaaattta 440

                                                                       
Query: 241 cagagcanaaagtcaggtgactctcatccctttaactagaagaactacttctgcaggtga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagcaaaaagtcaggtgactctcatccctttaactagaagaactacttctgcaggtga 500

                                                                  
Query: 301 agagaaggggagccagagggagtcgctgggaagacagtgctctgggtcttcgaga 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaaggggagccagagggagtcgctgggaagacagtgctctgggtcttcgaga 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)