BAC Information

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BAC

Clone NameMSMg01-276H08
Chromosome1 (Build37)
Map Location 166,570,532 - 166,570,719
singlet/doubletsinglet
Overlap genenone
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H08.T7 (MSMg01no276_h08.b1)MSMg01-276H08.TJ (MSMg01no276_h08.g1)
ACCAG414638AG414639
length737744
length of high quality
(start - end)
316 (46 - 361)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no276_h08.b1 PHD_FILE: MSMg01no276_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:24 2005CHROMAT_FILE: MSMg01no276_h08.g1 PHD_FILE: MSMg01no276_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCCCATTGCCTCGAAGCTGCTCTTCTCTCATACCGACTGCTCA
GCTCTTGAAAGGCCTCCCTGTGCCGGACGGATAGGAGGCTGTGGCTCCCT
GCAGCCAGCAACCAGAGTCAGTGTCTTCCTCTGATTACTTTTAACAGTTT
AAAAATTACACCTAAGGCTTGCAAAGATTCATTTGATCCCCCACAGAATC
TTTGGAAGTAGGCAGTGGCATTTGCAGACAAAGAAATCAGAGCCCATGTC
TTGTTTAAGCTTTAACATGTACAAGTAAAGTATTAAGTCCTAACTTACAT
CTCTATCTCTAGATTGTTTTTTATGCACACCGCTTCTTAGAAAGGGAGAG
CTCTCGGGGCTTTCTTGTGGCAGGTTTGAGTCCGCACTCAACTCTAGCAT
CCATAAGCTCTTGTGGATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCTATCTGAAACAAGGTCT
CTTTTAGCCTAAACTGACCTCAAAACTCTCAGTGTAGCTGAGAATGTCAT
TGAATTTCTGAAGCTCTTGCCTTTACTTCCTAAGTTCTGAGATTCTGAGT
ATGTTCCAATATACTTAACAAAGCCAACCAAAGTTTGTGTGTCTTGATTA
TGGAATGTGCTCTTGTTACTTCCTGTGCAAGCCAATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAA
AAGCAATCTACAGCAAACCAGGAGCCCACATCAAAGTAAATGGAGAGAAG
CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGACTGCCCACTTTC
TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC
AACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATA
TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTC
CACCAGAGAACTCTNNAAATCNGTATCAANACTTNGCCCGAAGTAGCTGG
ATATAAAATTAACTCAAACAAGTCAATGGAACAAAAAAAACACAAAGAAT
AAGCGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAC
AAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATC
TGTATGATAAAAACTTCAAGTCCCTGAAGAAATAAATTAAAGAAGATCTC
AGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGT
AAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCA
TCAAAATTCCAACTCAATTCTTCAACGAATTATAAGGAGCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h08.b1 MSMg01no276_h08.b1 CHROMAT_FILE:
MSMg01no276_h08.b1 PHD_FILE: MSMg01no276_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:24 2005
         (316 letters)



>mm_chr1_166570328_166571042
          Length = 715

 Score =  288 bits (149), Expect = 3e-82
 Identities = 179/189 (94%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcccattgcctcgaagctgctcttctctcataccgactgctcagctcttgaa 64
           ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 205 gaattcacttccattgtctcgaagctgctcttctctcataccaactgcttagctcttg-a 263

                                                                       
Query: 65  aggcctccctgtgccggacggataggaggctgtggctccctgcagccagcaaccagagtc 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 aggcctccctgtgatggacggataggaggctgtggctccctgcagccagcagccagagtc 323

                                                                       
Query: 125 agtgtcttcctctgattacttttaacagtttaaaaattacacctaaggcttgcaaagatt 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 agtgtcttcctttgattacttttaacagtttaaaaattacacctaaggcttgcaaaggtt 383

                    
Query: 185 catttgatc 193
           |||||||||
Sbjct: 384 catttgatc 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)