BAC Information

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BAC

Clone NameMSMg01-276H14
Chromosome1 (Build37)
Map Location 176,429,355 - 176,429,589
singlet/doubletsinglet
Overlap geneFmn2
Upstream geneBC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H14.T7 (MSMg01no276_h14.b1)MSMg01-276H14.TJ (MSMg01no276_h14.g1)
ACCAG414650AG414651
length748745
length of high quality
(start - end)
239 (127 - 365)295 (437 - 731)
definitionCHROMAT_FILE: MSMg01no276_h14.b1 PHD_FILE: MSMg01no276_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005CHROMAT_FILE: MSMg01no276_h14.g1 PHD_FILE: MSMg01no276_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTGTTGACCAGGCTGGCCTCTAATTTATAGAGATCTGCCTGC
CTCTGCCTCCCAAGTGCTTCATTCAAGGCTTAAAAGCATGTGCCACCACT
GCCAGGCTAAGAATTCTGTTTCTTTAAATGAAGTTATAGGATAGTTTCAT
GAGGTGTACTGCTTAGGTTTAGTGACAGAACAGCAGCATTGAGAATATAA
AACTCAAAGATCAGAACAGTGTGGCCCCATGCAAACATAGCTTTGTTTTG
TTTCTTTGTTGTTTGTTTCTTTTGACATGTTTTCAAGTAACTTTGTTTGA
AATATCTCTTATTAATAAGTTATGCCCCCCCCCCCACAGACTTCAGCAGG
CTGGACTTCTGCAGAATGAAATACTCTTTGAACTTACATGCAAAGGAAGG
AAGGAAGGAAGGACGGAAGGAAGAAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGTCATCTCTGTAGGCAATCTCTA
TGTCCCTGTCTCCCTATCATAGAATAGCATCCCAAACCCTCTATAAACAA
TCTTTTTTCTTTTTTCCTCTTCTTTTTAAAAATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTTCAAAGACGGTATTATGTAGCCCAGGC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCA
GAGAAGCACCTGAAAAAATGTTCCCCCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTTGGCTTACCCCCCCCCCATGTCCCAACCGGTAAG
AAGAACACATGCTCCACTATGTTCATAAAAAAAAAATTTATAATAGCCAG
AAGCCGGAACTAACCCAAATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAATACTACTCACCTATTTAAAAAAATGAA
TTTATGAAATTGCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAG
TGAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCAATGATAA
GTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTT
GCCAAACGCATGACAATTCAGAAGAACGAAGACCAAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h14.b1 MSMg01no276_h14.b1 CHROMAT_FILE:
MSMg01no276_h14.b1 PHD_FILE: MSMg01no276_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:25 2005
         (239 letters)



>mm_chr1_176429155_176429793
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggcttaaaagcatgtgccaccactgccaggctaagaattctgtttctttaaatgaagtta 376

                                                                       
Query: 61  taggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taggatagtttcatgaggtgtactgcttaggtttagtgacagaacagcagcattgagaat 316

                                                                       
Query: 121 ataaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ataaaactcaaagatcagaacagtgtggccccatgcaaacatagctttgttttgtttctt 256

                                                                  
Query: 181 tgttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctctta 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatatctctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)