BAC Information

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BAC

Clone NameMSMg01-276L06
Chromosome1 (Build37)
Map Location 114,412,717 - 114,413,033
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276L06.T7 (MSMg01no276_l06.b1)MSMg01-276L06.TJ (MSMg01no276_l06.g1)
ACCAG414813AG414814
length741744
length of high quality
(start - end)
324 (45 - 368)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no276_l06.b1 PHD_FILE: MSMg01no276_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:41 2005CHROMAT_FILE: MSMg01no276_l06.g1 PHD_FILE: MSMg01no276_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACTAGACAGACCTTGAATGCAGAGTTCTGCCTGCCTC
TACTTCTGCCTCTTGAATGCTGCCCATAAAGGGTATGCTCCACCACCAAC
TAGCATAGACTTGACCCATTAAAATGGCCCTCTGGTTGTGTCTGCATAGA
GGTAGACAAGTGTATAGGATTTCAACATGTGGCAGAAGTACTGATGAATA
AGTGCTGGCAGATATGTTGCTGGTTGTGGTAGGCAAAATAGTTGGTGGAG
ACTGAATCTTGTTTTCTAGATTAGTGTTTCTTGATGGGAACAAAAATAAC
ATTTAACCTTATCACTTTTGATTAATGCACCCCACCACTTGTTGTAGACA
TAGGGAATTTTTTTTCCAGAGTAATAAAATGTAGGGATGGGAAATTTCTA
CTTGGTATACAGGGCTAGGAATAGTTCATTGGTACGGAGGGACAGCAAAT
ACCAACTTGACTCATAGAGACAGAAAATACCTGTTATGCAGAAATAGGAA
GTATGCATTTGGCTGCAGACATCAAGAAAATTTAGTGTGATTTCTTGGCA
AAAAAATTTAAATTGAATTAAAAAGTGAACAGATATATGGGCTGAAATTC
TGTATGCTAAAGATGCTTAAATAAATGGGTCTGTGTATGGAGTCATAGCT
AGCTTCACCCATGGCACAGTCTGTTAATTCTGGAACTGTAN
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACAATTAAGAGCTTTTGTTGTG
CAAACCTTGTTCCTTAATTTAAAACTATTGGTTAAATAAAATTTACTACA
GCCAATTACTGGAGGGTTTAGACATAGGTGAGTTTGCAGAATTTGGTTGT
GGGTGGAAAAGCAAGAGATAAGAAGAGAAACCAGAAGAAAGAGACAAGAA
GGTACCATGAGAGGAGAGGTACTATGAGCACATGTCTAGGAGAAACAAGT
GTTTGAGATTAGACACCACTGGGGAGGTAGCCAGGCCAGCAGTTAGAAAA
GTAGTTTAGGGCTTATACTTTTCTCAGACCCCTGCCACAGCCAAATAAAA
TAAACATAATCTGAGTCATTAATGTGGAAGCTAGTCTGTAATAACCTTAA
ATTGGTTCTACTACAGTCTCAACAAATAAGGTGATGGGGAATGTGAAGAG
CATTGGCATGGAAGGGAGAGGAAGGAAGACCATGGAGAAAATGGTCAAAA
CCATGCTTGAACAGAAAGTCTCCAAAAGTCAAAGAATGTGCATTTTTTTT
CAGTAATTTATTTATTTATTTACATCTGATCACATCCGCCTTCCTCCTAT
CCTCCCAGTCCCACCTACCCTCCCACTCCTTCTCCCACATTTCCCTATCC
CATTCTCCCCAGAGAAATACACCCTCCCATATCCCTCAGTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_l06.b1 MSMg01no276_l06.b1 CHROMAT_FILE:
MSMg01no276_l06.b1 PHD_FILE: MSMg01no276_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:41 2005
         (324 letters)



>mm_chr1_114412407_114413130
          Length = 724

 Score =  592 bits (306), Expect = e-173
 Identities = 315/320 (98%), Gaps = 5/320 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagactagacagaccttgaatgcagagttctgcctgcctctacttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaattcactctgtagactagacagaccttgaatgcagagttctgcctgcctctacttct 568

                                                                       
Query: 64  gcctcttgaatgct--gcccataaagggtatgctccaccaccaactagcatagacttgac 121
           ||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcctcttgaatgctggg---ataaagggtatgctccaccaccaactagcatagacttgac 511

                                                                       
Query: 122 ccattaaaatggccctctggttgtgtctgcatagaggtagacaagtgtataggatttcaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccattaaaatggccctctggttgtgtctgcatagaggtagacaagtgtataggatttcaa 451

                                                                       
Query: 182 catgtggcagaagtactgatgaataagtgctggcagatatgttgctggttgtggtaggca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catgtggcagaagtactgatgaataagtgctggcagatatgttgctggttgtggtaggca 391

                                                                       
Query: 242 aaatagttggtggagactgaatcttgttttctagattagtgtttcttgatgggaacaaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaatagttggtggagactgaatcttgttttctagattagtgtttcttgatgggaacaaaa 331

                               
Query: 302 ataacatttaaccttatcac 321
           ||||||||||||||||||||
Sbjct: 330 ataacatttaaccttatcac 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)