BAC Information

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BAC

Clone NameMSMg01-276L17
Chromosome1 (Build37)
Map Location 170,815,553 - 170,815,868
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276L17.T7 (MSMg01no276_l17.b1)MSMg01-276L17.TJ (MSMg01no276_l17.g1)
ACCAG414835AG414836
length747759
length of high quality
(start - end)
319 (46 - 364)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no276_l17.b1 PHD_FILE: MSMg01no276_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:43 2005CHROMAT_FILE: MSMg01no276_l17.g1 PHD_FILE: MSMg01no276_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACATGTGAGTTTTTTGTGTCATAGAGGCTTTTGTTTGTAAAAA
TTTCCCATCAAATAGAAATTTACATCTGGTCTCAGAACTATTTCGATAAT
TATCATTAATCATCCTTAAAGTCAAAAGGTAATTAGTTCCTTTTTCTGTG
TCATTATGGCCAAATTCTTGGCAAAGACAACTGAAAAGAAGGGACATATA
TTTTGACTCATGGTTAGGGATCCAGTGCACTATGGGGAGGAAGTCCTGGT
ACTGGAACCAGCTCTCTCTCACGTGCAGCAGTGGAAGTGTGAGGTAGCTT
ACCCACACATTATTATTTTTTTGACCCCCACCCTTGACTAGATAAAGGAA
ATAGAAAATAACCCTCAAGGGTCACTCTTATAAACATAAATCTACTAGCT
ATTCACTGCATCCCCCAACTTCATTATCTCCCCAAAGAGTACAGCTAGCT
CAGGACCAAGCATGAAAATGCTTGATCGTGTGGTGGCTGTTTTGGATTTA
AACCATGACGTTCAGCTATATGGAGTGTTGAAAAAGAGCTCTGGCCTCCG
GGGAAATGCAATGCATTGCCTCCTAGTTATTCACAGAAGTTGTAGAATGG
AGGAAATTGGTACTAAAAATTAAAGTGTATCAGCTTCACCACATACTATG
AAGGCAGGCAGTGGGCATCCCAAGGCTGCTAAGCAGTCTTTAAACTG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGTCGGGTTAAGAAAATCTT
GCAGCATAGGAAACAGGGTGTCCTTTGAGTCTATATTGTGGCTTTTAGAT
CAGTGTTTTCATGGGATTCCTCTGGGTGTGTACAAGTTGGTCTCTGTATC
TATGTTCCTTGTGCCTTTTCTTGGCTTCTCTTCCTCCTGTTTGTTTTGTT
CTACTCTAATGTATTAGCTTTTGTTTTATCTTATTTTTACTTAAAACTTA
GAAGCCTATTTGTCTTTCTCATTATATGAGTGGATCTGGATGGGAAGAGA
GGTAGGAAGGAACTAGGTGGATTTCACNGGCAAGGCCCCCTTAATAAGGA
TATATGATGTGATTTTAAAAGCTATTTAACAAAAAAAGAATAAAAGAGTG
TGAGTCTCTCTGATAGGCCAACCATCCTCCAGTATGGCCGCCCTTCCACC
TAAGAGTGGATGTTCAGCATAAACTCGATTAGGTGAATTTTTTTTTTAAT
ATAGAAATGTACTTGAAATTGATGGTGTAATGAATGTGTAGTTGTATGTT
ATAATATCCTGGTTTTTTTTCATTAATCATTTCTATTTTAAATTTTTCAC
AAATATTTAAACTTTATTTTATATCTCTCTTACCCTATATATTTTTTGTA
ATTGTCATATAAAAAATGTTGTAACTTTTTATATAGTAAACCTTTATTTT
GTTATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_l17.b1 MSMg01no276_l17.b1 CHROMAT_FILE:
MSMg01no276_l17.b1 PHD_FILE: MSMg01no276_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:43 2005
         (319 letters)



>mm_chr1_170815350_170816068
          Length = 719

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaacatgtgagttttttgtgtcatagaggcttttgtttgtaaaaatttcccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaacatgtgagttttttgtgtcatagaggcttttgtttgtaaaaatttcccat 263

                                                                       
Query: 64  caaatagaaatttacatctggtctcagaactatttcgataattatcattaatcatcctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaatagaaatttacatctggtctcagaactatttcgataattatcattaatcatcctta 323

                                                                       
Query: 124 aagtcaaaaggtaattagttcctttttctgtgtcattatggccaaattcttggcaaagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtcaaaaggtaattagttcctttttctgtgtcattatggccaaattcttggcaaagac 383

                                                                       
Query: 184 aactgaaaagaagggacatatattttgactcatggttagggatccagtgcactatgggga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactgaaaagaagggacatatattttgactcatggttagggatccagtgcactatgggga 443

                                                                       
Query: 244 ggaagtcctggtactggaaccagctctctctcacgtgcagcagtggaagtgtgaggtagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaagtcctggtactggaaccagctctctctcacgtgcagcagtggaagtgtgaggtagc 503

                           
Query: 304 ttacccacacattatt 319
           ||||||||||||||||
Sbjct: 504 ttacccacacattatt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)