Query= MSMg01no276_m13.b1 MSMg01no276_m13.b1 CHROMAT_FILE:
MSMg01no276_m13.b1 PHD_FILE: MSMg01no276_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:47 2005
(311 letters)
>mm_chr1_9571271_9571980
Length = 710
Score = 555 bits (287), Expect = e-162
Identities = 302/307 (98%), Gaps = 1/307 (0%)
Strand = Plus / Plus
Query: 5 gaattcctagcaagctatgcatgcagggccagtgaccaaagaccaccttaggaatcagtt 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcctagcaagctatgcatgcagggccagtgaccaaacaccaccttaggaatcagtt 264
Query: 65 agaaaactcttcgagactaatacattgaggttagattacacaagcactattgcaaacact 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaactcttagagactaatacattgaggttagattacacaagcactattgcaaacact 324
Query: 125 gtcctaccttgatcttataagccattccctttcctgtgcccagaatggtcttcatataat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctaccttgatcttataagccattccctttcctgtgcccagaatggtcttcatataat 384
Query: 185 acatattcatctaaatctttcagtagaagatggagacatagctcaatggcagagcatctg 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatattcatctaagtctttcagtagaagatggagacatagctcaatggcagagcatctg 444
Query: 245 agtagcataagtgagtccctgggcttgatcatccacattgccaacagcaaaagaaggaag 304
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 445 agtagcataagtgagtccctgggcttgatcatccacactgccaacagcaaa-gaaggaag 503
Query: 305 aagagaa 311
|||||||
Sbjct: 504 aagagaa 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no276_m13.g1 MSMg01no276_m13.g1 CHROMAT_FILE:
MSMg01no276_m13.g1 PHD_FILE: MSMg01no276_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:47 2005
(288 letters)
>mm_chr1_9738706_9739392
Length = 687
Score = 505 bits (261), Expect = e-147
Identities = 276/283 (97%), Gaps = 5/283 (1%)
Strand = Plus / Minus
Query: 1 tacacaaacaaacaaac----aaacaaataaacagacagacagacagacagacaaaaaga 56
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 542 tacacaaacaaacaaacaaataaacaaataaacagacagacagacagacatacaaaaaga 483
Query: 57 caaatataataacagggtgttttctttaaaagtgttcttacaagttggcgatcagtaatt 116
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caaatataataacaggatgttttctttaaaagtgttcttacaagttggcgatcagtaatt 423
Query: 117 ctcaaactgtgacctttcatcattaacctaccagcttataactacgaataagatagaagc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctcaaactgtgacctttcatcattaacctaccagcttataactacgaataagatagaagc 363
Query: 177 tcagttacggcacttgctagctaagtggtaattttaaaaaaatgacatcgtatttgaaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcagttacggcacttgctagctaagtggtaattttaaaaaaatgacatcgtatttgaaaa 303
Query: 237 attaatatactttaaaaaaaaaagtagcctcatagaaaactcc 279
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 302 attaatatactt-aaaaaaaaaagtagcctcatagaaaactcc 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
