BAC Information

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BAC

Clone NameMSMg01-276M22
Chromosome1 (Build37)
Map Location 98,462,931 - 98,463,281
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276M22.T7 (MSMg01no276_m22.b1)MSMg01-276M22.TJ (MSMg01no276_m22.g1)
ACCAG414888AG414889
length731727
length of high quality
(start - end)
351 (381 - 731)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no276_m22.b1 PHD_FILE: MSMg01no276_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:49 2005CHROMAT_FILE: MSMg01no276_m22.g1 PHD_FILE: MSMg01no276_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGAGTTGCTTTCCTAAGAGTGGGTCATGTATGGAAATTACACTA
GCAGTATAGCTGCAAGTCTCACATTCCACTAAGGGATCTGCTTTGGTTAT
TCATTCCGGGAGTTCTGAGCTGAGCCTGGAAATATTAACCTTTATAGTCA
CTGAAAAGAGAAGATGGGTACAGTTTCTGGAAGGTGAGCGAACACGCACT
GGCGATTTAGCACATGTAAGCAAGGTAGGCATATGACAACAAATGTAATT
AGTACTTACACCTGGGGCTCCTAATTTGCTATGTTTAAGCATCAATTAAA
TGAGTGTGTTTTGTTTCCCCCCCCCCCCGAAAGATCAACTTTGTTAAATA
AGTTTCCCTTTTAAAGTCACTATATAATCATACAGAACATTGAAGATAAG
GCAGATGGTACACATGTCCAACACACAGATTCTGCTCTTATCCGAGGGCA
CTTTTGTGATATCTGACTAAATACACCTATCCAACTGTTGCAGTTAAATA
AAATCAATACTTTATTTAGGATTCTCAATTTTTACCTAATTAACTATTTT
TAATTTTGTTTAATTCACAGTTTGATCAGTATGTCATCTTCTCTTCACAC
GTGGCATCTTCCATATTTAAAAACAATTATTTAGTTCTCAGTCAGCTTTT
GTTGTANATTTTGTTGATGGTAAACACATAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCA
TGAATAGGTGTTGGATCTTGCCCAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACATTGAT
GGATTTCCATATATTAAATCATCCCTGCAACCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGTGAGA
ATTTTATTGAGTATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAA
GTTCTCTATTTTTGTTGGACCCCCCCCCGGCTTAGGTATCAGAGTAATTG
TGGCTTCATAGAATGAGTTGGATAAAATTCCCTCTACTTCTATTTTGTGG
AATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTCGTAGAA
CTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTGGGTGGGAGACTA
TTAATGACAGCTTCTATTTCTTTAGGGGATATGGGAATGTTTAGATCGTT
ATCTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGT
CCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCGTTTGTAGAAG
GATCTGATGGTGTTTTGGATTTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_m22.b1 MSMg01no276_m22.b1 CHROMAT_FILE:
MSMg01no276_m22.b1 PHD_FILE: MSMg01no276_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:49 2005
         (351 letters)



>mm_chr1_98462731_98463481
          Length = 751

 Score =  673 bits (348), Expect = 0.0
 Identities = 350/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatcaactttgttaaataagtttcccttttaaagtcactatataatcatacagaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatcaactttgttaaataagtttcccttttaaagtcactatataatcatacagaacat 260

                                                                       
Query: 61  tgaagataaggcagatggtacacatgtccaacacacagattctgctcttatccgagggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagataaggcagatggtacacatgtccaacacacagattctgctcttatccgagggca 320

                                                                       
Query: 121 cttttgtgatatctgactaaatacacctatccaactgttgcagttaaataaaatcaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgtgatatctgactaaatacacctatccaactgttgcagttaaataaaatcaatac 380

                                                                       
Query: 181 tttatttaggattctcaatttttacctaattaactatttttaattttgtttaattcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttaggattctcaatttttacctaattaactatttttaattttgtttaattcacag 440

                                                                       
Query: 241 tttgatcagtatgtcatcttctcttcacacgtggcatcttccatatttaaaaacaattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgatcagtatgtcatcttctcttcacacgtggcatcttccatatttaaaaacaattat 500

                                                              
Query: 301 ttagttctcagtcagcttttgttgtanattttgttgatggtaaacacatac 351
           |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ttagttctcagtcagcttttgttgtaaattttgttgatggtaaacacatac 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)