BAC Information

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BAC

Clone NameMSMg01-277I14
Chromosome1 (Build37)
Map Location 27,699,957 - 27,700,177
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I14.T7 (MSMg01no277_i14.b1)MSMg01-277I14.TJ (MSMg01no277_i14.g1)
ACCAG415410AG415411
length738741
length of high quality
(start - end)
293 (384 - 676)238 (129 - 366)
definitionCHROMAT_FILE: MSMg01no277_i14.b1 PHD_FILE: MSMg01no277_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:41 2005CHROMAT_FILE: MSMg01no277_i14.g1 PHD_FILE: MSMg01no277_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGGAATTCAACAAGGAAATTACCTATTCAGTAACTAATTAGC
ATAATAAAAGACAGATCCTACAGCCCAGGGCTAGTCTGCAAAATGTTTAC
TAGGACAGAAAGGACAGTCTTATCCAAATAAGGGTTTACCATGAGAAAAG
TTAGGGAATCCCACTGAGACAGGTTTCTTCATTAGGCCCTAAGAATTCAG
GCAGAACTATAGAGCATAAATAAATTTTATGCCTCAGTCCAGCCTTTATT
TTTTATATTAACAACAGGGAGGATATGTAACCCCCCACAGCCTGAAATCT
GGCTGATCAGGTTTGTTTGTTAGCACCCCCCCCGCATTGGGGGTGGAGCC
TGCCACCCTATCATTCTGCCACTCCCACTGCTACTTCCTGCCGCCTAGCT
GTTCCGGAGCCAGCATGTGGTCACCTGAAACTGGACTCCTAGGATGATTT
GGCTGGAATGGGGAATGGGCCCCTCCCCCTTCTTCATAACCCAGTGTCTT
GGAGTAGTAAAATTGAACCTTGATCAGAGTGATGTCTTGGTTCCATCCTT
TCTCACGCTGCCTAGTTTCCTCTTTTCTTTCAGATTCCAAGATGCCTCCC
AGGCTAGAACCCAAACATGTGAGCCGCTGGTCGTACTCAACACTTCTACA
TTGAGAGTACACTAATGTCTAGCAGAAGGAATAGCTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCACAAAATTCCAGGACAGCCAGGGCTACACACAG
AAACCCTGTCTCAAAATGATCTAACCCAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAGTGGAATTGGACCTTTAACA
AGAATGTCTACATTATGAACACAAACATACATATTCACATAGAGGGAAGG
ACAGAGGGAACAAGGGAGAGTAAAATGGGGAGAGCATGGCGTGAACACAG
AAAGTTATAATATTGATACTCCATAATTTATTTTCTATGCAAATGAATTG
TATTTTCTCTGTTTAATGGATTACCCAACTGCCACACTGGTAATGAACTT
AGTAATTTTTATGGAATACCAAACACTCAAAAATAATTATTATTAAATAT
TTTTATTCAATGTGAAGTTTGAAATAAATTGTAAAATGATATAAAATAAT
AATCTAGATTCAATACTGTAAATGAGTTTGTCCTACAGAGCACAATGTTA
TGCACTACTTATACTACAATTAAAATGAAACAGTGCTATACAACATGAAG
GAAGTAGTTTCACTACCATTGGGATTGGTGTGTAGTCATGATTTTAAATT
GTTTTGCCAATTTTTACCTGGTTTTATGTATATATTTTTTCTGAGAATTA
AGTTTTTTCTCTTTCCTTTGTAGTTATCCATTATACATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i14.g1 MSMg01no277_i14.g1 CHROMAT_FILE:
MSMg01no277_i14.g1 PHD_FILE: MSMg01no277_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:41 2005
         (238 letters)



>mm_chr1_27699705_27700342
          Length = 638

 Score =  412 bits (213), Expect = e-119
 Identities = 219/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 14  taaataaataaataaataaataaataaataaataaataagtggaattggacctttaacaa 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaataaataaataaataaataaataaataaataaataagtggaattggacctttaacaa 414

                                                                       
Query: 74  gaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagagggaac 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagagggaac 354

                                                                       
Query: 134 aagggagagtaaaatggggagagcatggcgtgaacacagaaagttataatattgatactc 193
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagggagagtaaaatggtgagagcatggcgtgaacacagaaagttataatattgatactc 294

                                                    
Query: 194 cataatttattttctatgcaaatgaattgtattttctctgt 234
           || ||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagaatttattttctatgcaaatgaattgtattttctctgt 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)