BAC Information

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BAC

Clone NameMSMg01-277I20
Chromosome1 (Build37)
Map Location 105,908,335 - 106,029,264
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I20.T7 (MSMg01no277_i20.b1)MSMg01-277I20.TJ (MSMg01no277_i20.g1)
ACCAG415421AG415422
length751754
length of high quality
(start - end)
352 (400 - 751)268 (487 - 754)
definitionCHROMAT_FILE: MSMg01no277_i20.b1 PHD_FILE: MSMg01no277_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:42 2005CHROMAT_FILE: MSMg01no277_i20.g1 PHD_FILE: MSMg01no277_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,908,335 - 105,908,686)(106,029,004 - 106,029,264)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTACAAATATTACCCATAAAAATTTCATTTTTATATTATCTTTTCAC
TTAGTTATGATCCTCAAATTTTTACCCATAGATAATTATTGATAATAAAT
TAAATCACACATGGAAAATTTTCAGGTAATGATAGTTTTCCTAACTGATA
TTTGTTGTGTCAAATAATCAATCAGTTAATTAACGTAAATGAGCAATGAA
TTGAATAATTAAAATATGAAGTTGAACATCTCCAGCATGTTCCAAAGTGG
AATATCACTTTACAGAGTTCTCCTGTTTTTTATAAAGCAAATAACAGAGA
AACTGAAGGAGTTCTATTTTTTTTGGAGCACGACCTTGGGCTAGTATAAT
GTGACTTTAGAGTAATGTTTGTTTGCCTTTCTAAAGCTGAACTGAGCATC
CAAAGTGAGAGGGACACAGTGCACACCGAAATAAACTGAGCATACATAGT
GAAAGCCTACCAGGAACATAGAAATTTTTTTCAGCGCTTAGATTTCTAGG
AGGCTAAATTATAGAGACATCCAGAGACAAGAGTACTCACATGAAACTTT
GAAAGATGTGTTCAGAAAATAGCATGAAATAATGACACTGTTACCATACC
AAAAATAATTGAACCCCGTCTCCAATTCTTATGTTTAAAATCTAGTTTCC
TATTTTTGGTAAGAACCTTCAATGCCATGAGAATGAACAGTATCATGAGT
A
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACAGTTGATTTTTCTAGAAAC
TGTATGTTTCATGAGTTTGGATTTGACCGATATACAATATTACAAGGTAA
GCTGATTTTGTGTCAGCATGGATGACAAGTGTTACTATAAGGTCAGTTTG
TGATTGACATTTAGAAGTAATTCTTTATATTTGAAGATGGGGCATGGATG
AATGTTTTAATATTTTTATATACTTCATTTCTGAAAGTATATAAGATGGA
GAAAACAAGCAAGGGTGAAGACAACTTAAGTGAAGCCTTTTGAGAAAGTA
GAAAGACATGAGCATATGTTTTTTTCTTGCCCCCCCGACACTTCAATTAT
AATGGTGTTATAAGTATAGAGATTTTTAGCCTCCTCACATTTGTTTACGC
ACTCGCACACAGCACACTCGCACGCACACTCACTCACACACACATATATA
TATATTAGGAATTTTCTTCATTTACATTTCAAATACTATTCCCATAGAGT
TTTTACCTAGTCTTCTTGGAGCAACATCTACTTTTGTCTCTAATACAATG
AGGAGCAATAAACACTTTGTATATAAAACATATATTCTACATATTGTGTT
AATCATGAAATCTTCATGAATACAAACCTAAATATCTCTACATCTTTTGT
GCCTGTGATATCTTTTTTCATATTTCAATCTTTATCCCCCTCCACCTAGT
CTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i20.b1 MSMg01no277_i20.b1 CHROMAT_FILE:
MSMg01no277_i20.b1 PHD_FILE: MSMg01no277_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:42 2005
         (352 letters)



>mm_chr1_105908135_105908886
          Length = 752

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgactttagagtaatgtttgtttgcctttctaaagctgaactgagcatccaaagtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgactttagagtaatgtttgtttgcctttctaaagctgaactgagcatccaaagtgag 260

                                                                       
Query: 61  agggacacagtgcacaccgaaataaactgagcatacatagtgaaagcctaccaggaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacacagtgcacaccgaaataaactgagcatacatagtgaaagcctaccaggaacat 320

                                                                       
Query: 121 agaaatttttttcagcgcttagatttctaggaggctaaattatagagacatccagagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatttttttcagcgcttagatttctaggaggctaaattatagagacatccagagaca 380

                                                                       
Query: 181 agagtactcacatgaaactttgaaagatgtgttcagaaaatagcatgaaataatgacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtactcacatgaaactttgaaagatgtgttcagaaaatagcatgaaataatgacact 440

                                                                       
Query: 241 gttaccataccaaaaataattgaaccccgtctccaattcttatgtttaaaatctagtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaccataccaaaaataattgaaccccgtctccaattcttatgtttaaaatctagtttc 500

                                                               
Query: 301 ctatttttggtaagaaccttcaatgccatgagaatgaacagtatcatgagta 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatttttggtaagaaccttcaatgccatgagaatgaacagtatcatgagta 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no277_i20.g1 MSMg01no277_i20.g1 CHROMAT_FILE:
MSMg01no277_i20.g1 PHD_FILE: MSMg01no277_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:42 2005
         (268 letters)



>mm_chr1_106028748_106029415
          Length = 668

 Score =  505 bits (261), Expect = e-147
 Identities = 261/261 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   atatatatatattaggaattttcttcatttacatttcaaatactattcccatagagtttt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atatatatatattaggaattttcttcatttacatttcaaatactattcccatagagtttt 458

                                                                       
Query: 68  tacctagtcttcttggagcaacatctacttttgtctctaatacaatgaggagcaataaac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tacctagtcttcttggagcaacatctacttttgtctctaatacaatgaggagcaataaac 398

                                                                       
Query: 128 actttgtatataaaacatatattctacatattgtgttaatcatgaaatcttcatgaatac 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 actttgtatataaaacatatattctacatattgtgttaatcatgaaatcttcatgaatac 338

                                                                       
Query: 188 aaacctaaatatctctacatcttttgtgcctgtgatatcttttttcatatttcaatcttt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaacctaaatatctctacatcttttgtgcctgtgatatcttttttcatatttcaatcttt 278

                                
Query: 248 atccccctccacctagtctgc 268
           |||||||||||||||||||||
Sbjct: 277 atccccctccacctagtctgc 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)