BAC Information

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BAC

Clone NameMSMg01-277J15
Chromosome1 (Build37)
Map Location 70,453,820 - 70,454,050
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneIkzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J15.T7 (MSMg01no277_j15.b1)MSMg01-277J15.TJ (MSMg01no277_j15.g1)
ACCAG415456AG415457
length716716
length of high quality
(start - end)
231 (132 - 362)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no277_j15.b1 PHD_FILE: MSMg01no277_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:46 2005CHROMAT_FILE: MSMg01no277_j15.g1 PHD_FILE: MSMg01no277_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGGTGCTTTCGCTGTGTGGTGAGGCACACTGGCAAGCAGGTAT
CTATGGCCTGTGGGGCTGTTTCCTCCTGGACATGTCTGTGGGTGGCCTGG
CTGCCCACAGTCTCTCAGTGTCTTCCTACTTCTGAGCTGTGTGGCCTTTA
TGAGTCCTAGGCATAGAACAATTTTGGGCTTTGGCTACCAAGACAGGCAT
TAAGCTAAGATGAATAAACAGATGTTCTTCCCCTGACTGCTGTAAGAACA
CTATCATCAACAAGGTGTCTCTGCCCATTGCCAGAGGGAGCTCTTTACAT
TCCTATGCAAGAATTTTATATAATCACATCCACCCCAAAAAATGACTGTG
GAAATCAAAGAAAAAAAACTAGACATTGTGATAAATCTAAAATAAATGAG
AAAGCAGAGTATATAGTCTTTTTTTTTCTCTCAAACAAGACAGGGTTTCT
CTGTGTAGCCCTGGCTTCCTTTGAACTCAATTTATAGAGCAGGCTGACCT
CGGACTTTGAGATCCACAGGCCTCTGCCTCCCAATCAGATTATATATTCG
TGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCCTGTGTGTG
TGTGTGTTCTTATCTGACCCCTGTCATTCATTATCCTTTTCCTCTCCATA
TTTTTCTTTCCTTCTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAATAGTGGGATTTCAAATGGCTGG
GAAACACATAAAGATATGTTCACCACCTTTAGCAATCAGGGAAGGGCACC
TGCTGAACTATGTTCTTTATGTTGTTTTTTTTTTCATAATAGCCTGTAAC
AGGAAACAACCTAGATGCCTCTCAACAGAAGAATGGATAAAGAAAATGTA
CATTTACACAATGTAGTATTTATCAGATGTTTAAAACAAATGGCATCATG
AAATTTGCAGGAAAATGAGAAATATAAAATATAACCCTGAGTGAGGTGTC
TCAGACCCAGATTACTAGGTTACCGCCCCCCACCCCCAAGTGGATATTAA
CCACTAAGTAAATGATAACCAAGCTACAATACATAGACCAAGAGAGGTTA
GATAAATAGGGAAGATCTGGGAGTTGGGGGAGGCCTGGATCTCCAGAGGA
AAAAAAAATAGAATATTTTACATGTAGACTGAAGGTCATTCATTGGTGAA
GGGGACAATTATGCTTTTTTATTTGACAATTATATTTTAATAAATCTGAA
AAACAAAGGAACAGGAAATAAAGCAATATGGCATTTAAGTAAATTAGGTT
AAAAATATGTATTTTAAAATGATATTTTATTTATGTCTTTCTGTGTATGG
ATTTGTATATGTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j15.b1 MSMg01no277_j15.b1 CHROMAT_FILE:
MSMg01no277_j15.b1 PHD_FILE: MSMg01no277_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:46 2005
         (231 letters)



>mm_chr1_70453620_70454250
          Length = 631

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%), Gaps = 2/232 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctgtgggtggcctggctgcccacagtctctcagtgtcttcctacttctgagctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atgtctgtgggtggcctggctgcccacagtctctcagtgtcttcctccttctgagctgtg 260

                                                                       
Query: 61  tggcctttatgagtcctaggcatagaacaattttgggctttggctaccaagacaggcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcctttatgagtcctaggcatagaacaattttgggctttggctaccaagacaggcatt 320

                                                                       
Query: 121 aagctaagatgaataaacaga-tgttcttcccctgactgctgtaagaacactatcatcaa 179
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctaagatgaataaac-gaatgttcttcccctgactgctgtaagaacactatcatcaa 379

                                                               
Query: 180 caaggtgtctctgcccattgccagagggagctctttacattcctatgcaaga 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaggtgtctctgcccattgccagagggagctctttacattcctatgcaaga 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)