BAC Information

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BAC

Clone NameMSMg01-277K24
Chromosome1 (Build37)
Map Location 80,174,921 - 80,175,159
singlet/doubletsinglet
Overlap genenone
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
Downstream geneA830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K24.T7 (MSMg01no277_k24.b1)MSMg01-277K24.TJ (MSMg01no277_k24.g1)
ACCAG415518AG415519
length747623
length of high quality
(start - end)
239 (129 - 367)45 (71 - 115)
definitionCHROMAT_FILE: MSMg01no277_k24.b1 PHD_FILE: MSMg01no277_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:52 2005CHROMAT_FILE: MSMg01no277_k24.g1 PHD_FILE: MSMg01no277_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACACAGGTTGCATGTCACTTTACGTCTCTGTTTTGACCCTAAA
ACTATATATATAGCTTAAGATTATGCCCAATATGTTTTATTTGGAGAAAA
TTTAAAACCCCATCAATGCCACAGGTGGCCAGGGTGATGGTTGGTTTTGA
TTGGATTAAGAAATAACTAGGGCATTAGGATCATCTTGGAGAATGTGTGT
AAAGATGCTTCCAGAGAAGATTTAACAGAGACTGTAAAACTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCA
GGTCATTTCCTGGTCTTTTTTTTCACACCCCCCCCCCCGGGGAAAGAGCA
GCCAGCTAAACACCAGCACTAATCTCTCTTCTGAAACCTCACTGTAGATG
TGATATAACCAGCTACCTCTGGCTCCACCCTCGCACCCTCACCCTATCAC
AACTCCCCTGCCACAATGAACAGCATCCCTCTCAAACTCTAAGTCGGAAG
AGGTTCTTTGTTCCTTANATTGATTAATATGAGGCATTTAGCCACAATGG
TGAGAAAAAGTACCCCACATGCCCATCCGTGTTCTCAGGAATCTGTGTCC
TGTGATCAAGCAGCCCGCCCCAAGTGCTCAGGGTATTTCCCTCGGGACAT
GCTCCTGGACCGCCATGCTCTCTGGGCAAAATGTCATTTCCAATCTN
TCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGACTTTTACTTAATTTCATATTTCCATAG
ATATATGTGTGAACTTTATCCTGTGTAGCTCTTTTAATTATCCCATTGAC
ATGATAACAGTGAGTTAAAAATCACAAGCCTTTTCTCCAGGGGGTTTTTA
ATTTAAATTTTCCCCCCGGGAAAAAAATTGGGGATTTCCCAAAAAAAAAA
AAACCAAAAAAAGTTTTTTCTCCCAATTTTTTAAAAAAACCCCCCCCTGA
AAAAAAGAGCCCTTTAAAAAAAAAAAAAATTTGGGGGGGGGCTTTTTAAA
AAAAAGGGGAGAGGAAAAACCTCTCCCCCCCTCTTCTATTCCCACAAAAC
CCCCTTTTTTTTTTTTTGGCTCCCCCCCCTCAGGGGGGTTTTTTTTTTGT
TGAAACTATTTGGGGTATAACCCCCCACACCTCAAAAAAAAAAAAAAAAG
CGGTTTTGGGGAATAANGATTTACCCCCCCCCCAAGACAAAACACCCCCC
ACCCCTGGGGGGGGGTGGTGGTTGTTGTCGGTTTTCTGTCCTTTCCCCCC
TACTTATTCATCCTTAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k24.b1 MSMg01no277_k24.b1 CHROMAT_FILE:
MSMg01no277_k24.b1 PHD_FILE: MSMg01no277_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:52 2005
         (239 letters)



>mm_chr1_80174721_80175357
          Length = 637

 Score =  373 bits (193), Expect = e-108
 Identities = 226/241 (93%), Gaps = 8/241 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatgttttatttggagaaaatttaaaaccccatcaatgccacaggtggccagggtgat 60
           ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct: 201 aatatgttttatttggagaaattttaaaaccccatcaatgtcacaggtggccagagtgat 260

                                                                       
Query: 61  ggttggttttgattggattaagaaataactagggcattaggatcatcttggagaatgtgt 120
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggctggttttgattggattaagaaataactagggcattaggatcatcttggaaaatgtgt 320

                                                                       
Query: 121 gtaaagatgcttccagagaagatttaacagagactgtaaaactctctctctctctctctc 180
           |||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||
Sbjct: 321 gtaaggatgcttccagaaaagatttaacaga--ctgtaaaactctctctctctctctctc 378

                                                                       
Query: 181 tctctctctctctctctctctctctctctctctctctct------gcaggtcatttcctg 234
           |||||||||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 379 tctctctctctctctctctctctctctctctctctctctctctctgcaggtcatttcctg 438

            
Query: 235 g 235
           |
Sbjct: 439 g 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 637
Length adjustment: 9
Effective length of query: 230
Effective length of database: 628
Effective search space:   144440
Effective search space used:   144440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)